Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,857,534 – 15,857,638 |
Length | 104 |
Max. P | 0.891730 |
Location | 15,857,534 – 15,857,638 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 85.07 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -19.23 |
Energy contribution | -20.04 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.78 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15857534 104 + 22407834 AACUUCUCAUUUACAAUCUCUGCUGGCAGAGUGUGUAAAAAAAGAGAAGCACCAAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCUGGCAG ..((((((.((((((..(((((....)))))..))))))....))))))..(((..(((....)))....((((((.((((.....)))).)))))).)))... ( -29.70) >DroSec_CAF1 29778 103 + 1 AACUUCUCAUUUACAAUCUCUGCUGGUAAAGUGUGUAAA-AAAGAGGAGCACCAAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCCGGCAG ...................(((((((.............-...(((.(((.......)))....)))...((((((.((((.....)))).))))))))))))) ( -24.70) >DroSim_CAF1 30837 104 + 1 AACUUCUCAUUUACAAUCUCUGCUGGUAAAGUGUGUAAAAAAAGAGAAGCACCCAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCCGGCAG ...................(((((((....(.((((............)))).)................((((((.((((.....)))).))))))))))))) ( -23.40) >DroEre_CAF1 17092 80 + 1 AACUUCUCAUUUACAAUCUCUGCUGGCAAAGUGUGUG------------------------AAACUCAAACUCAGAUGUCAUAGCCCGACUUUUGAGCCGGCAG ...................((((((((.....((.((------------------------.....)).))(((((.(((.......))).))))))))))))) ( -21.40) >consensus AACUUCUCAUUUACAAUCUCUGCUGGCAAAGUGUGUAAA_AAAGAGAAGCACCAAAAGUUAAAACUCAAACUCAGAUGUCGUAGCCCGACUUUUGAGCCGGCAG ...................((((((((...((((..............))))...................(((((.((((.....)))).))))))))))))) (-19.23 = -20.04 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:58 2006