Locus 5586

Sequence ID 2L_DroMel_CAF1
Location 15,853,846 – 15,853,955
Length 109
Max. P 0.767659
window8868

overview

Window 8

Location 15,853,846 – 15,853,955
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 98.17
Mean single sequence MFE -19.11
Consensus MFE -18.10
Energy contribution -18.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.95
SVM decision value 0.52
SVM RNA-class probability 0.767659
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15853846 109 + 22407834
CACAAGUAAUUUGAACUUCAGGCUUGCAACUACCACAAAUUUCCAAGACAAGUCCAUUACCACAAAGCAAGUCGCAGGGGCAUCAAACAGCCAUUACUCAAAUUUUCCC
.......(((((((.(((..(((((((.......................................)))))))..)))(((........))).....)))))))..... ( -16.73)
>DroSec_CAF1 26080 109 + 1
CACAAGUAAUUUGAACUUCAGGCUUGCAACUAACAGAAAUUUCCAAGACAAGUCCAUUACCACAAAGCAAGUCUCAGGGGCAUCAAACAGCCAUUACUCAAAUUUUCCC
.......(((((((.(((.((((((((........((....))...((....))............)))))))).)))(((........))).....)))))))..... ( -20.30)
>DroSim_CAF1 26439 109 + 1
CACAAGUAAUUUGAACUUCAGGCUUGCAACUAACAGAAAUUUCCAAGACAAGUCCAUUACCACAAAGCAAGUCUCAGGGGCAUCAAACAGCCAUUACUCAAAUUUUCCC
.......(((((((.(((.((((((((........((....))...((....))............)))))))).)))(((........))).....)))))))..... ( -20.30)
>consensus
CACAAGUAAUUUGAACUUCAGGCUUGCAACUAACAGAAAUUUCCAAGACAAGUCCAUUACCACAAAGCAAGUCUCAGGGGCAUCAAACAGCCAUUACUCAAAUUUUCCC
.......(((((((.(((.((((((((.......................................)))))))).)))(((........))).....)))))))..... (-18.10 = -18.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:54 2006