| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,852,738 – 15,852,852 |
| Length | 114 |
| Max. P | 0.747326 |
| Location | 15,852,738 – 15,852,852 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.66 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -13.38 |
| Energy contribution | -13.38 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15852738 114 + 22407834 ACACACAC------AUGCACAUCCAACCGAACACACUCACUCACACACGUGUUGGCCCAAGUACUUACCGAAACACGUUCAACAGCUAGAACAACACGUACUCAAUUUAGAGAUACACGA ........------.............((.................(((((((((............)).......((((........))))))))))).(((......))).....)). ( -14.20) >DroPse_CAF1 14618 96 + 1 UCG----------------CUCC----CUAGCUCC----CUCUCACACGUGUUGGCUUCAGUAUUUACCGAAACACGUUCAACAGCUAGAACAACACGUACUCAAUUUAGAGAUACACUA ...----------------....----((((((..----.......(((((((....((.((....)).))))))))).....))))))........((((((......))).))).... ( -17.14) >DroSec_CAF1 24993 115 + 1 ACACACACACACACACGCGCAUCCAACCA-ACACA----CUCACAUACGUGUUGGCCCAAGUACUUACCGAAACACGUUCAACAGCUAGAACAACACGUACUCAAUUUAGAGAUACACGA ...............((.(.((((..(((-((((.----.........)))))))....(((((.....(.....)((((........)))).....))))).......).))).).)). ( -17.80) >DroPer_CAF1 40379 96 + 1 UCG----------------CUCC----CUAGCUCC----CUCUCACACGUGUUGGCUUCAGUAUUUACCGAAACACGUUCAACAGCUAGAACAACACGUACUCAAUUUAGAGAUACACUA ...----------------....----((((((..----.......(((((((....((.((....)).))))))))).....))))))........((((((......))).))).... ( -17.14) >consensus ACA________________CACC____CUAACACA____CUCACACACGUGUUGGCCCAAGUACUUACCGAAACACGUUCAACAGCUAGAACAACACGUACUCAAUUUAGAGAUACACGA ..............................................(((((((((............)).......((((........))))))))))).(((......)))........ (-13.38 = -13.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:53 2006