Locus 5584

Sequence ID 2L_DroMel_CAF1
Location 15,852,535 – 15,852,631
Length 96
Max. P 0.791007
window8866

overview

Window 6

Location 15,852,535 – 15,852,631
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 90.45
Mean single sequence MFE -20.00
Consensus MFE -17.62
Energy contribution -17.75
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.62
Structure conservation index 0.88
SVM decision value 0.59
SVM RNA-class probability 0.791007
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15852535 96 - 22407834
GCUAAUACCAAAAUCAGGCAAUUAGAUGCUUAAGUGGUCUUGCUUGUAAAGCCUUAAAUACCUAAGGGGAUCCCAUUACAUUAGCAACAGUAAUAA
((((((((((...(.(((((......))))).).)))).......((((..(((((......)))))((...)).))))))))))........... ( -18.90)
>DroSec_CAF1 24790 96 - 1
GCUAAUACCAAAAUCAGGCAAUUAGAUGCUUAAGUGGUCGUGCUUGAAAAACCUUAAACACCUAAGGGAAUCCAAAUACAUUAGCGGCAGUAAUAA
((((((((((...(.(((((......))))).).)))).(((.(((.....(((((......))))).....))).)))))))))........... ( -21.10)
>DroSim_CAF1 25156 96 - 1
GCUAAUACCAAAAUCAGGCAAUUAGAUGCUUAAGUGGUCUUGCUUGAAAAGCCUUAAACACCUAAGGGAAUACAAAUACAUUAGCGGCAGUAAUAA
((((((.......(((((((...((((((....)).)))))))))))....(((((......)))))............))))))........... ( -20.10)
>DroEre_CAF1 12243 96 - 1
GCUAAUUCAAAAAUCAGGCAAUUAGAUGCUUAAGUGGUAUUGCUUGAAAAGCCUUAAACACCUAAGGGAAUCCAAACGCGUUAGUGACUGUAAUAA
((((((.(.....(((((((((....(((....)))..)))))))))....(((((......)))))..........).))))))........... ( -19.90)
>consensus
GCUAAUACCAAAAUCAGGCAAUUAGAUGCUUAAGUGGUCUUGCUUGAAAAGCCUUAAACACCUAAGGGAAUCCAAAUACAUUAGCGACAGUAAUAA
((((((.......((((((((.....(((....)))...))))))))....(((((......)))))............))))))........... (-17.62 = -17.75 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:52 2006