Locus 5581

Sequence ID 2L_DroMel_CAF1
Location 15,847,499 – 15,847,608
Length 109
Max. P 0.513183
window8858

overview

Window 8

Location 15,847,499 – 15,847,608
Length 109
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 86.52
Mean single sequence MFE -29.45
Consensus MFE -24.01
Energy contribution -25.07
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.513183
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15847499 109 + 22407834
CAACUGUAUUAAGUCGAAUAGCGAUCGCCUUUAUUUGUUCAGUGCAGGCGAAGAACUCAAGACUC-GGACUUCGCCUCAGGACCUUGGACCUCCUUUGUCCUUUCGAGUA
...(((((((.((.((((((((....))...)))))))).)))))))((((((..(.........-)..))))))((((((((...((....))...)))))...))).. ( -28.90)
>DroSec_CAF1 19780 98 + 1
------------UACGAAUGGCGAUCGCUUUUAUUUGUUCAGUGCAGGCGAAGAACUCAAGACUCCGGUCCUCGCCUCAGGACCUUGGACCUCCUUUGUCCUUUCGAGUA
------------..((((.(((((((((((.((((.....)))).)))))).........(((....))).)))))..(((((...((....))...))))))))).... ( -28.80)
>DroSim_CAF1 20174 98 + 1
------------UACGAAUCGCGAUCGCCUUUAUUUGUUCAGUGCAGGCGAAGAACUCAAGACUCCGGUCCUCGCCUCAGGACCUUGGACCUCCUUUGUCCUUUCGAGUA
------------..((((..((((((((((.((((.....)))).)))))).........(((....))).))))...(((((...((....))...))))))))).... ( -28.10)
>DroEre_CAF1 4749 97 + 1
------------UACGAAAGGCGAUCGCCUUUAUUUGCUCAGUGUAGGAAAGGAACUCAAGACUC-GGUCCUCGCCUCAGGACAUCGGACCUCCUUUGUCCUUUCGAGUA
------------....((((((....))))))...(((((..((.(((..((((.((........-))))))..)))))(((((..((....))..)))))....))))) ( -32.00)
>consensus
____________UACGAAUGGCGAUCGCCUUUAUUUGUUCAGUGCAGGCGAAGAACUCAAGACUC_GGUCCUCGCCUCAGGACCUUGGACCUCCUUUGUCCUUUCGAGUA
..............((((.(((((((((((.((((.....)))).)))))).........(((....))).)))))..(((((...((....))...))))))))).... (-24.01 = -25.07 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:45 2006