Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,847,230 – 15,847,330 |
Length | 100 |
Max. P | 0.729633 |
Location | 15,847,230 – 15,847,330 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.41 |
Mean single sequence MFE | -16.34 |
Consensus MFE | -14.27 |
Energy contribution | -14.27 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.01 |
Structure conservation index | 0.87 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15847230 100 - 22407834 UCUAGUA----------------UUCAA----UUAUACGUGCAAAUUAAGCAUAUUCUUUCAGUGCACUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA ....(((----------------(....----..))))..(((((((((........((((((((..........))))))))......)))))))))(((((............))))) ( -16.54) >DroSim_CAF1 19912 100 - 1 UAUAGUA----------------CUCAA----UUUUUUUUGCAAAUUAAGCAUAUUCUUUCAGUGCAUUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA .......----------------.....----........(((((((((........((((((((..........))))))))......)))))))))(((((............))))) ( -14.64) >DroEre_CAF1 4494 120 - 1 AUCAGUAAAUGUACACUGCCAUAGUUAAGGUUUCCUAUAUGCAAAUUAAACAUAUUCUUUCAGUGCUUUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA ...((.(((((((....(((........))).........(((((((((........((((((((..........))))))))......)))))))))..)))))))))........... ( -17.84) >consensus UAUAGUA________________CUCAA____UUAUAUAUGCAAAUUAAGCAUAUUCUUUCAGUGCAUUUAUUUACGCUGGAAUUCUCAUUAAUUUGUUAUGCAUUUCUCUCUACGCGUA ........................................(((((((((........((((((((..........))))))))......)))))))))(((((............))))) (-14.27 = -14.27 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:44 2006