Locus 5579

Sequence ID 2L_DroMel_CAF1
Location 15,846,776 – 15,846,879
Length 103
Max. P 0.919755
window8856

overview

Window 6

Location 15,846,776 – 15,846,879
Length 103
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 96.46
Mean single sequence MFE -29.48
Consensus MFE -27.14
Energy contribution -26.95
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.19
Structure conservation index 0.92
SVM decision value 1.13
SVM RNA-class probability 0.919755
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15846776 103 - 22407834
GCUGUGCAAAAAGCCAUUGGGAAACCGUUGGGAAUGAGAAAAACUGCGCGGGGGGAUGCGGGAAAAUGGAGCGACGGG-AGAGGAAAACUGUUGGUAAUCUCCA
.((((((......(((.(((....))).))).....((.....))))))))((((((............(.((((((.-.........)))))).).)))))). ( -29.72)
>DroSec_CAF1 19133 103 - 1
GCUGUGCAAAAAGCCAUUGGGAAACCGUUGGGAAUGAGAAAAACUGCGCGGGGGGAUGCGGGAAAAUGGAGCGACGGG-CGAGGAAAACUGUUGGUAAUCUCCA
.((((((......(((.(((....))).))).....((.....))))))))((((((((...........)).((.((-(.((.....))))).)).)))))). ( -30.00)
>DroSim_CAF1 19469 103 - 1
GCUGUGCAAAAAGCCAUUGGGAAACCGUUGGGAAUGAGAAAAACUGCGCGGGGGGAUGCGGGAAAAUGGAGCGACGGG-CGAGGAAAACUGUUGGUAAUCUCCA
.((((((......(((.(((....))).))).....((.....))))))))((((((((...........)).((.((-(.((.....))))).)).)))))). ( -30.00)
>DroEre_CAF1 4056 102 - 1
GCUGUGCAAAAAGCCAUUGGGAAACCGUUGGGAAUGAGAAAAACUGCGCGGG--GAGGCGGGAAAAUGGAGCGGCGGUAAGAGGAAAACUGUUGGUAAUCUCCA
.((((((......(((.(((....))).))).....((.....))))))))(--((((((......)).(.(((((((.........))))))).)..))))). ( -28.20)
>consensus
GCUGUGCAAAAAGCCAUUGGGAAACCGUUGGGAAUGAGAAAAACUGCGCGGGGGGAUGCGGGAAAAUGGAGCGACGGG_AGAGGAAAACUGUUGGUAAUCUCCA
.((((((......(((.(((....))).))).....((.....))))))))...............(((((((((((...........)))))).....))))) (-27.14 = -26.95 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:43 2006