| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,846,387 – 15,846,479 |
| Length | 92 |
| Max. P | 0.525231 |
| Location | 15,846,387 – 15,846,479 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 89.49 |
| Mean single sequence MFE | -18.68 |
| Consensus MFE | -13.93 |
| Energy contribution | -14.05 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15846387 92 - 22407834 CAAAACCUUGAUUCUAACUUGGCCAUUGAUAGGGGAAAUAAUUGCCAAGUGCAAUGGAAAACAUAUUUUACAAACAUUAUGUCACAUCAAGG .....((((((((((((((((((.((((.(......).)))).)))))))....))))).(((((............)))))....)))))) ( -19.80) >DroSec_CAF1 18752 92 - 1 CAAAACCUUGAUUCAAACUUGGCCAUUGAUAGGGGAAAUAAUUUCCAAGCGCAGUGGAAACCAUAUUUCACAAACAUUUUGUCACAUCAAGA ......((((((.......(((((((((....(((((....))))).....))))))...)))......((((.....))))...)))))). ( -18.10) >DroSim_CAF1 19080 92 - 1 CAAAACCUUGAUUCAAACUUGGCCAUUGAUAGGGGAAAUAAUUGUCAAGCGCAGUGGAAACCAUAUUUCACAAACAUUUUGUCACAUCAAGA ......((((((.((((..((((..(((((((.........)))))))..)).((((((......))))))...)).))))....)))))). ( -17.90) >DroEre_CAF1 3667 92 - 1 CAAAGCCUUGAUUCAAACUUGGCCAUUGACAGGGGAAUUAAUUGCCAAGCGCUGUGGAUAUCAUAUUUUACAAAUAUUAAGUCAUGUCAAGA ......((((((.....((((((.(((((........))))).))))))...((((((........)))))).............)))))). ( -18.90) >consensus CAAAACCUUGAUUCAAACUUGGCCAUUGAUAGGGGAAAUAAUUGCCAAGCGCAGUGGAAACCAUAUUUCACAAACAUUAUGUCACAUCAAGA ......((((((.....((((((.((((..........)))).))))))....((((((......))))))..............)))))). (-13.93 = -14.05 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:42 2006