Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,844,230 – 15,844,337 |
Length | 107 |
Max. P | 0.543502 |
Location | 15,844,230 – 15,844,337 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.77 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -18.97 |
Energy contribution | -18.50 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.21 |
Mean z-score | -1.44 |
Structure conservation index | 0.65 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15844230 107 + 22407834 CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGCUUACGCC-CAACUGCCUGCCAGCUAUCCUGCGCCGCAUCCACA------------UCCUCGUCCAUAUCCACAUGCACAU ....((((((((((((((......))))))....((((((....((.-.....))..)))).)).....)).)))))).....------------.....((.(((......))).)).. ( -27.60) >DroPse_CAF1 3743 101 + 1 ---UAUGCGGGCGGCGUAUUUAUUUACGCCUUUGAGUGGUUUACGCC-CAGCUGCCUUCCAGCUAUCUAUCCCC---CUCACA------------GCCCCAGUCACAGUCCCAGUCGCAG ---..((.((((((((((......))))))..((((.((..((.(..-.(((((.....)))))..)))..)).---))))..------------))))))((.((.......)).)).. ( -31.00) >DroSec_CAF1 16456 107 + 1 CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC-CAACUGCCUGGCAGCUAUCCUGCGCCACAUCCACA------------UCCUCGUCCAUAUCCACAUGCACAU .....(((((((((((((......)))))).(((.(((.....))).-)))..))))(((.((......))))).........------------...................)))... ( -27.80) >DroSim_CAF1 16764 107 + 1 CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC-CAACUGCCUGGCAGCUAUCCUGCGCCACAUCCACA------------UCCUCGUCCAUAUCCACAUGCACAU .....(((((((((((((......)))))).(((.(((.....))).-)))..))))(((.((......))))).........------------...................)))... ( -27.80) >DroEre_CAF1 1339 119 + 1 CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC-CAACUGCCUGGCAGCUAUCCUGCGCCACAGCCACAUUCACAUUCACGUCCACGUCCAUAUCCACAUGCACAU .....(((((((((((((......)))))).....((((((...((.-.....)).((((.((......)))))).))))))............))))..((........))..)))... ( -31.50) >DroPer_CAF1 29534 102 + 1 ---UAUGCGGGCGGCGUAUUUAUUUACGCCUUUGAGUGGUUUACGCCCCAGCUGCCUUCCAGCUAUCUAUCCCC---CUCACA------------GCCCCAGUCACAGUCCCAGUCGCAG ---..((.((((((((((......))))))..((((.((..((......(((((.....)))))...))..)).---))))..------------))))))((.((.......)).)).. ( -30.40) >consensus CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC_CAACUGCCUGCCAGCUAUCCUGCGCCACAUCCACA____________UCCUCGUCCAUAUCCACAUGCACAU .....(((((((((((((......))))))....((((((....)))...)))))))).))........................................................... (-18.97 = -18.50 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:41 2006