| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,843,643 – 15,843,744 |
| Length | 101 |
| Max. P | 0.768897 |
| Location | 15,843,643 – 15,843,744 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 95.05 |
| Mean single sequence MFE | -37.02 |
| Consensus MFE | -31.39 |
| Energy contribution | -31.45 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15843643 101 + 22407834 AAAACGUUGAUUGAUAUGCCCUGCCUGCCAGCGGGGCGAUUUUAUCCCGCUGCGGGGUUGGCCAUGUGUAGUCGCAAUUUAGGCGUAUUUGCUUGUACUGU ........((((((((((.((.((((..((((((((........))))))))..)))).)).))))).)))))(((...((((((....))))))...))) ( -36.40) >DroSec_CAF1 15858 101 + 1 AAAACGUUGAUUGAUAUGGCCUGCCUGCCAGCGGGGCGAUUUUAUCCCGCUGCGGGCUGUGCCAUGUGAAGUCGCAAUUUAGGCGUAUUUGCUUGUACAGU .....((.((((.((((((((.((((((.(((((((........))))))))))))).).)))))))..))))))....((((((....))))))...... ( -42.30) >DroSim_CAF1 16165 101 + 1 AAAACGUUGAUUGAUAUGCCCUGCCUGCCAGCGGGGCGAUUUUAUCCCGCUGCGGGGUGUGCCAUGUGAAGUCGCAAUUUAGGCGUAUUUGCUUGUACAGU ...(((..(...((((((((...(((((.(((((((........))))))))))))........((((....)))).....))))))))..).)))..... ( -34.10) >DroEre_CAF1 756 101 + 1 AAAACGUUGAUUGAUAUGCCCUGCCUGCCGGCGGGGCGAUUUUAGCCCGCUGCGGGGUUGGCCCUGUGUAGUCGCAAUUUAGGCGUAUUUGCUUGUACAGU .....((.(((((...(((((((((....))))))))).............((((((....)))))).)))))))....((((((....))))))...... ( -35.30) >consensus AAAACGUUGAUUGAUAUGCCCUGCCUGCCAGCGGGGCGAUUUUAUCCCGCUGCGGGGUGGGCCAUGUGAAGUCGCAAUUUAGGCGUAUUUGCUUGUACAGU ...(((..(...((((((.(((((((((.(((((((........))))))))))))........((((....))))...))))))))))..).)))..... (-31.39 = -31.45 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:40 2006