Locus 5575

Sequence ID 2L_DroMel_CAF1
Location 15,843,395 – 15,843,491
Length 96
Max. P 0.855730
window8852

overview

Window 2

Location 15,843,395 – 15,843,491
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 87.50
Mean single sequence MFE -28.35
Consensus MFE -20.36
Energy contribution -21.80
Covariance contribution 1.44
Combinations/Pair 1.14
Mean z-score -2.22
Structure conservation index 0.72
SVM decision value 0.81
SVM RNA-class probability 0.855730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15843395 96 + 22407834
UCCAAAUUUUUUCCGAGUGUUCUAACAACUGUCGUUUAGAUAGUGCAGCAAACUGGUUCUUCGGCACAAAACUGAGGCUAGGAAAAGGUUGGGAAA
(((.((((((((((.(((.((......((((((.....)))))).(((....)))((.(....).))......)).))).)))))))))).))).. ( -26.10)
>DroSec_CAF1 15609 96 + 1
UCCGUUUUUUUUUCUGGUGUACUAACAACUGUCGUUUAGAUAGUGCAGCAGAAUGGUCCUUCGGUACAAAACUGAAGCUAGGAAAAGGUUGGGAAA
((((.(((((((((((.(((((((....(((.....))).))))))).)))).(((..(((((((.....)))))))))).))))))).))))... ( -26.10)
>DroSim_CAF1 15916 96 + 1
UCCAAAUUUUUUUCUGGUGUACUAACAACUGUCGUUUAGAUAGUGCAGCAGACUGGUCCUUCGGUACAAAACUGAAGCUAGGAAAAGGUUGGGAAA
(((((.((((((((((.(((((((....(((.....))).))))))).))))((((..(((((((.....))))))))))))))))).)))))... ( -30.20)
>DroEre_CAF1 510 94 + 1
AACGACUUUUCUCCGGGUGUACUAACAAAUGUCGUUUGGAUAGUGCAGCAGACU-GUCCUUCGGCACCA-AUUGAAGCUGGGAAAAGGUUGGGAAA
..((((((((..((((((......))...(((((...(((((((.......)))-))))..)))))...-.......))))..))))))))..... ( -31.00)
>consensus
UCCAAAUUUUUUCCGGGUGUACUAACAACUGUCGUUUAGAUAGUGCAGCAGACUGGUCCUUCGGCACAAAACUGAAGCUAGGAAAAGGUUGGGAAA
(((.(((((((((((((..........((((((.....))))))..............((((((.......))))))))))))))))))).))).. (-20.36 = -21.80 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:39 2006