Locus 5574

Sequence ID 2L_DroMel_CAF1
Location 15,842,983 – 15,843,076
Length 93
Max. P 0.840654
window8851

overview

Window 1

Location 15,842,983 – 15,843,076
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 98.39
Mean single sequence MFE -31.65
Consensus MFE -31.60
Energy contribution -31.85
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 1.00
SVM decision value 0.75
SVM RNA-class probability 0.840654
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15842983 93 + 22407834
GCACUUGGAUGGGAGUCUGGGCCCGCCUAACCAACUUCCUGUACAUGGCUGAUGACUUGUUCGAGCACAAUCCCCCGGAUUCCUAUCCCUGGA
...((.(((((((((((((((...(((......((.....))....)))((.((.(((....)))))))....)))))))))))))))..)). ( -32.70)
>DroSec_CAF1 15143 93 + 1
GCACUUGGAUGGGAGUCUGGGCCCGCCUAACUAACUUCCUGUACAUGGCUGAUGACUUGUUCGAGCACAAUCCCCCGGAAUCCUAUCCCUGGA
...((.((((((((.((((((...(((......((.....))....)))((.((.(((....)))))))....)))))).))))))))..)). ( -29.00)
>DroSim_CAF1 15450 93 + 1
GCACUUGGAUGGGAGUCUGGGCCCGCCUAACUAACUUCCUGUACAUGGCUGAUGACUUGUUCGAGCACAAUCCCCCGGAUUCCUAUCCCUGGA
...((.(((((((((((((((...(((......((.....))....)))((.((.(((....)))))))....)))))))))))))))..)). ( -32.70)
>DroEre_CAF1 43 93 + 1
GCACUUGGAUGGGAGUCUGGGCCCGCCUAACUAACUUCCUGUACAUGGCUGAUGACUUGUUCGAGCACAAUCCCCCGGAUUCCUAUCCCUGAA
...(..(((((((((((((((...(((......((.....))....)))((.((.(((....)))))))....)))))))))))))))..).. ( -32.20)
>consensus
GCACUUGGAUGGGAGUCUGGGCCCGCCUAACUAACUUCCUGUACAUGGCUGAUGACUUGUUCGAGCACAAUCCCCCGGAUUCCUAUCCCUGGA
...(..(((((((((((((((...(((......((.....))....)))((.((.(((....)))))))....)))))))))))))))..).. (-31.60 = -31.85 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:38 2006