Locus 5572

Sequence ID 2L_DroMel_CAF1
Location 15,842,233 – 15,842,325
Length 92
Max. P 0.845995
window8846

overview

Window 6

Location 15,842,233 – 15,842,325
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 95.29
Mean single sequence MFE -17.92
Consensus MFE -16.13
Energy contribution -16.13
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.90
SVM decision value 0.77
SVM RNA-class probability 0.845995
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15842233 92 + 22407834
CAACAACCCAUCCACUCUACUUUCUAAGUCCAACUUUUAGUGUCAUACAACUGGAUGGUCUUUUAAGUAAAGUAGAAUAUUUAAGAAGAACA
...............(((((((((((((.(((...((((((........))))))))).)))...)).))))))))................ ( -16.60)
>DroSec_CAF1 14419 92 + 1
CAACAAGCCAUCCACUUUACUUUCUAAGUCCAACUUUUAGUGUCAUGCAACUGGAUGGUCUUUUAAGUAAAGUAGAAUAUUUAAUAGGAACA
..........((.(((((((((...(((.(((...((((((........))))))))).)))..))))))))).))................ ( -20.00)
>DroSim_CAF1 14715 92 + 1
CAACAAGCCAUCCACUCUACUUUCUAAGUCCAACUUUUAGUGUCAUACAACUGGAUGGCCUUUUAAGUAAAGUAGAAUAUUUAACAAGAACA
......((((((((.........(((((.......)))))...........))))))))((((((((((........))))))).))).... ( -17.15)
>consensus
CAACAAGCCAUCCACUCUACUUUCUAAGUCCAACUUUUAGUGUCAUACAACUGGAUGGUCUUUUAAGUAAAGUAGAAUAUUUAACAAGAACA
..........((.(((.(((((...(((.(((...((((((........))))))))).)))..))))).))).))................ (-16.13 = -16.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:32 2006