Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,739,236 – 1,739,330 |
Length | 94 |
Max. P | 0.952150 |
Location | 1,739,236 – 1,739,330 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 89.14 |
Mean single sequence MFE | -18.37 |
Consensus MFE | -18.55 |
Energy contribution | -18.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.57 |
Structure conservation index | 1.01 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1739236 94 - 22407834 CAA-AGUAGAUGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGUAAAGCCACGAUAAAUACA------------AAAAGAAAAACUAAGCC ...-.((((.......))))..........(((.(((.(((((...(((((.((....)).)))))))))).)))...------------...((.....))..))) ( -17.10) >DroSim_CAF1 2832 106 - 1 CAA-AGUAGAUGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGCAAAGCCACGAUAAAUACAAAAAAAAAUACAAAAAGGAAAACUAAGCC ...-.((((.......))))..........(((.(((.(((((...(((((.((....)).)))))))))).)))..................((.....))..))) ( -19.90) >DroYak_CAF1 2855 100 - 1 CAAAAGUAGAGGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGCACAGCCACGAUAAAUACAAAA-------CAAAAAGGAAAACUAAGCC .....((((.......))))..........(((.(((.(((((...((((..((....))..))))))))).)))......-------.....((.....))..))) ( -18.10) >consensus CAA_AGUAGAUGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGCAAAGCCACGAUAAAUACAAAA_______CAAAAAGGAAAACUAAGCC .....((((.......))))..........(((.(((.(((((...(((((.((....)).)))))))))).)))..................((.....))..))) (-18.55 = -18.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:38 2006