Locus 5567

Sequence ID 2L_DroMel_CAF1
Location 15,832,493 – 15,832,613
Length 120
Max. P 0.500000
window8830

overview

Window 0

Location 15,832,493 – 15,832,613
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -24.93
Consensus MFE -19.06
Energy contribution -20.40
Covariance contribution 1.34
Combinations/Pair 1.08
Mean z-score -2.08
Structure conservation index 0.76
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15832493 120 - 22407834
UAAACUUGCCUAAUUUAAAAAUACGGAUAUUUUUGAAACGUUUAUAAGUAAACAUAUAAUCCCAAUAUCAACCAACGUGGGAUGUUGUAUAUUAAUUAGCUAAUACAGCUAGUUCAUAUA
.............((((((((((....))))))))))..(((((....))))).........(((((((..((.....)))))))))(((((.((((((((.....)))))))).))))) ( -22.40)
>DroSec_CAF1 5087 120 - 1
UAAGCUUGCCUUAUUUAAAAAUACGUGUAUUUCUAAAACGUUUAUUCGUUAGCAUUUAAUCCCAAUAUCAACCAGCGUGGGAUGCUGGGCAUUAAUUAGCUAAUACAGCUAGUUCAUAUA
..((((.((....((((.(((((....))))).))))..........((((((..(((((((((.((((..((.....)))))).)))).)))))...))))))...)).))))...... ( -24.20)
>DroSim_CAF1 5276 120 - 1
UAAGCUUGUCUUAUUUAAAAAUACGUGUAUUUCUAAAACGUUUAUCCGUUAGCAUUUAAUCCCAAUAUCAACCAACGUGGGAUGUUGGGCAUUAAUUAGCUAAUACAGCUAGUUCAUAUA
..((((.((....((((.(((((....))))).))))..........((((((..((((((((((((((..((.....))))))))))).)))))...)))))))))))).......... ( -28.20)
>consensus
UAAGCUUGCCUUAUUUAAAAAUACGUGUAUUUCUAAAACGUUUAUACGUUAGCAUUUAAUCCCAAUAUCAACCAACGUGGGAUGUUGGGCAUUAAUUAGCUAAUACAGCUAGUUCAUAUA
..((((.((....((((.(((((....))))).))))..........((((((..((((((((((((((..((.....))))))))))).)))))...))))))...)).))))...... (-19.06 = -20.40 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:18 2006