Locus 5565

Sequence ID 2L_DroMel_CAF1
Location 15,830,598 – 15,830,718
Length 120
Max. P 0.649690
window8826

overview

Window 6

Location 15,830,598 – 15,830,718
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.35
Mean single sequence MFE -18.98
Consensus MFE -15.27
Energy contribution -16.27
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.80
SVM decision value 0.24
SVM RNA-class probability 0.649690
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15830598 120 - 22407834
CACAGCAAAAAACUGAAAGUAAUUGCAGUAGAUUCCAAUGAUGAAAAUCAGGAAGCAAAAGAAGCACCUCCUGACAAUUUAAGCGAAAUCAACACAAGUGAGGAAAUGAAGUCCUUCGAA
....((.....((((.((....)).))))...((((..((((....))))))))))....((((((..((((.((......................)).))))..)).....))))... ( -20.65)
>DroSec_CAF1 3202 105 - 1
CACAGCAAGAAACUUAAAGUAAUUGCAGUUGAUUUCAAUGAUGAAAAUCAGGAAGCAAAAGAAGCACCUACUGACCAUUUAAGCCAAAUCAACACAAGUGAGGAA---------------
(((.((((...((.....))..)))).((((((((....(((....)))(((..((.......)).)))................))))))))....))).....--------------- ( -19.50)
>DroSim_CAF1 3424 101 - 1
CACAGCAAGAAACUUAAAGUAAUUGCAGUUGAUUUCAAUGAUGAAAAUCAGGAAGCAAAAGAAGCACCUA----CCAUUUAAGCCAAAUCAACACAAGUAAGGAA---------------
....((((...((.....))..)))).((((((((....(((....)))(((..((.......)).))).----...........))))))))............--------------- ( -16.80)
>consensus
CACAGCAAGAAACUUAAAGUAAUUGCAGUUGAUUUCAAUGAUGAAAAUCAGGAAGCAAAAGAAGCACCUACUGACCAUUUAAGCCAAAUCAACACAAGUGAGGAA_______________
(((.((((...((.....))..)))).((((((((....(((....)))(((..((.......)).)))................))))))))....))).................... (-15.27 = -16.27 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:15 2006