Locus 5564

Sequence ID 2L_DroMel_CAF1
Location 15,830,255 – 15,830,375
Length 120
Max. P 0.537880
window8825

overview

Window 5

Location 15,830,255 – 15,830,375
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.67
Mean single sequence MFE -31.77
Consensus MFE -22.05
Energy contribution -22.55
Covariance contribution 0.50
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.537880
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15830255 120 + 22407834
UGUGCAACGUGAUAAUGCCAUUUCUGUGCAUUUUGCCAGCUUACAAAGUGCGCUGAAAGAACUUUAUUGUCUGCAAAAGUGUAGAUUAUACAAUCAGGCUAGUGCUAGAAACCGGCAAAG
...............((((.((((.((((((((((........)))))))))).))))......(((.(((((((....))))))).)))...((.(((....))).))....))))... ( -32.50)
>DroSec_CAF1 2706 120 + 1
UGUGCAACGUGAUAAUGCCAUUUCUGUGCAUUUUACCAGCUUACAAAGUGCGCUGAAAGAACUUUAUUGUCUGCAAAAGUGUAGAUUAUGCAAUCAGGCUAGUGCUAGAACCCGGCAAAG
...............((((.((((.(((((((((..........))))))))).))))......(((.(((((((....))))))).)))...((.(((....))).))....))))... ( -28.40)
>DroSim_CAF1 2928 120 + 1
UGUGCAACGUGAUAAUGCCAUUUCUGUGCAUUUUGCCAGCUUACAAAGUGCGCUGAAAGAACUUUAUUGUCUGCAAAAGUGUAGAUUAUGCAAUCAGGCUAGUGCUAGAACCCGGCAAAG
...............((((.((((.((((((((((........)))))))))).))))......(((.(((((((....))))))).)))...((.(((....))).))....))))... ( -32.20)
>DroPer_CAF1 12119 115 + 1
UGUGCAGCGUGAUAAUGCAAUUUCUGUACGUUUCUCUGGCUUACAAAGUAGCCAGAAAGAACUUUAUUGUCUGCAAAUGUGCAGAUUAUAUAAUCAUGCUAGGGUCUUAGCU-----AGG
.....((((((((.(((.....(((((((((((.(((((((........))))))).(((.(......))))..)))))))))))...))).))))))))............-----... ( -34.00)
>consensus
UGUGCAACGUGAUAAUGCCAUUUCUGUGCAUUUUGCCAGCUUACAAAGUGCGCUGAAAGAACUUUAUUGUCUGCAAAAGUGUAGAUUAUACAAUCAGGCUAGUGCUAGAACCCGGCAAAG
................(((.((((.((((((((((........)))))))))).))))((....(((.(((((((....))))))).)))...)).)))..................... (-22.05 = -22.55 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:14 2006