Locus 5563

Sequence ID 2L_DroMel_CAF1
Location 15,829,520 – 15,829,639
Length 119
Max. P 0.566937
window8824

overview

Window 4

Location 15,829,520 – 15,829,639
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 96.63
Mean single sequence MFE -40.57
Consensus MFE -35.63
Energy contribution -35.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.88
SVM decision value 0.07
SVM RNA-class probability 0.566937
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15829520 119 - 22407834
UAUCUGUGUGGCGCGGUAGCUACAAAAAUAUUGCAGCAUAUUUCUAGGCGUAUUUAUGGGUUGCGCUUAGUUUGCCGUCACAUACCAUGAUGGUUGUCGUGGGCCAAGGGGGAGAGCCG
..(((.(.(((((((((((((.(((.....))).)))......(((((((((.........)))))))))..))))))......(((((((....)))))))))))..).)))...... ( -40.30)
>DroSec_CAF1 1976 118 - 1
UAUCUGUGUGGCGCGGUAGCUACAAAAAUAUUGCAGCAUAUUUCUAGGCGUAUUUAUGGGUUGCGCUUAGUUUGCCGUCACAUAGCAUGAUGGUUGUCGUGGGCCAAGAGGG-GCGGAG
...(((((((((((((((..........)))))).(((.....(((((((((.........)))))))))..))).)))))))))((((((....)))))).(((......)-)).... ( -40.70)
>DroSim_CAF1 2204 118 - 1
UAUCUGUGUGGCGCGGUAGCUACAAAAAUAUUGCAGCAUAUUUCUAGGCGUAUUUAUGGGUUGCGCUUAGUUUGCCGUCACAUAGCAUGAUGGUUGUCGUGGGCCAAGAGGG-GCGGAG
...(((((((((((((((..........)))))).(((.....(((((((((.........)))))))))..))).)))))))))((((((....)))))).(((......)-)).... ( -40.70)
>consensus
UAUCUGUGUGGCGCGGUAGCUACAAAAAUAUUGCAGCAUAUUUCUAGGCGUAUUUAUGGGUUGCGCUUAGUUUGCCGUCACAUAGCAUGAUGGUUGUCGUGGGCCAAGAGGG_GCGGAG
...(((((((((((((((..........)))))).(((.....(((((((((.........)))))))))..))).)))))))))((((((....))))))..((....))........ (-35.63 = -35.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:13 2006