| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,828,897 – 15,828,996 |
| Length | 99 |
| Max. P | 0.778454 |
| Location | 15,828,897 – 15,828,996 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 95.96 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.53 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15828897 99 - 22407834 UCCAUUAAUUGUGUACAGACAUUGAAGUUUUGUCUCUCCAUUCAAAAAUAAUUUCCUGCACGCGCUUGAAAGUAUGCUAUAAUUCACACGUAGCACAAA ........(((((((((((((.........)))))......................(((..(........)..)))............)).)))))). ( -15.20) >DroSec_CAF1 1417 99 - 1 UCUAUUCAUUGUGCACAGACAUUUAAAUUUUGUCUCUCCAUUUAAAAAUAAUUUCCUGCACGCGCUUGAAAGUAUGCUAUAAUUCACACGUAGCACAAA ........(((((((((((((.........)))))......................(((..(........)..)))............)).)))))). ( -17.20) >DroSim_CAF1 1613 99 - 1 UCUAUUCAUUGUGCACAGACAUUUAAAUUUUGUCUCUCCAUUUAAAAAUAAUUUCCUGCACGCGCUUGAAAGUAUGCUAUAAUUCACACGUAGCACAAA ........(((((((((((((.........)))))......................(((..(........)..)))............)).)))))). ( -17.20) >consensus UCUAUUCAUUGUGCACAGACAUUUAAAUUUUGUCUCUCCAUUUAAAAAUAAUUUCCUGCACGCGCUUGAAAGUAUGCUAUAAUUCACACGUAGCACAAA ........(((((((((((((.........)))))......................(((..(........)..)))............)).)))))). (-16.75 = -16.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:12 2006