Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,828,518 – 15,828,633 |
Length | 115 |
Max. P | 0.557804 |
Location | 15,828,518 – 15,828,633 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 97.09 |
Mean single sequence MFE | -15.87 |
Consensus MFE | -15.20 |
Energy contribution | -15.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.96 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15828518 115 + 22407834 GACAAAAAAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAACAAAAUAGAAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ...................((((((...((((.((((.........(((.....))).((((((.(.....)...))))))..........)))).))))))))))......... ( -16.20) >DroSec_CAF1 1039 114 + 1 GACAAA-AAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAAAAAUAAAGAAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ......-............((((((...((((.((((.................((........))...........(((((....))))))))).))))))))))......... ( -15.00) >DroSim_CAF1 1235 114 + 1 GACAAA-AAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAAAAAUAAAGGAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ......-............((((((...((((.((((((.........))........((((((.(.....)...))))))..........)))).))))))))))......... ( -16.40) >consensus GACAAA_AAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAAAAAUAAAGAAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ...................((((((...((((.((((..........((.....))..((((((.(.....)...))))))..........)))).))))))))))......... (-15.20 = -15.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:10 2006