Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,732,088 – 1,732,193 |
Length | 105 |
Max. P | 0.861937 |
Location | 1,732,088 – 1,732,193 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 80.87 |
Mean single sequence MFE | -26.15 |
Consensus MFE | -19.83 |
Energy contribution | -20.38 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.91 |
Structure conservation index | 0.76 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1732088 105 + 22407834 AAAAAUUAACUAUGGAUAUCAACAAGUGCUAGAGAUG--AUAUAAGCAAUAACCCACCUGAAGGGCUGCUUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU .........((((.(....)..((((((((((.((((--.(((.....)))..((((((.....(((....)))...))))))))))..)))))))))))))).... ( -28.90) >DroPse_CAF1 223 101 + 1 AAAAUGCAUCAAU---AAUCAACAAGUUCCGUUU-UCACUUCUAUG--GAAACUCACCAGCAGCGCUGCCUGGCAGAAGGUGGCGUCAACCAGGACCUGGUAGGGCU .....((......---..............((((-(((......))--)))))...((....((((..(((......)))..))))..(((((...))))).)))). ( -27.70) >DroSec_CAF1 3584 102 + 1 AAAAAAUAACUAUGGAUAUCAACAAGUGGUAAAG-----AUAUAAGCAAAAACCAACCUGCAGGGCUGCCUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU .........((((.(....)..((((((.(((.(-----((....(((..........)))...((..(((......)))..)))))..))).)))))))))).... ( -23.70) >DroSim_CAF1 3272 102 + 1 GAAAAAUAACUAUGGAUAUCAACAAGUGCUAAAG-----AUAUAAGCAAAAACCAACCUGCAGGGCUGCCUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU .........((((.(....)..((((((((((.(-----((....(((..........)))...((..(((......)))..)))))..)))))))))))))).... ( -28.20) >DroEre_CAF1 4321 102 + 1 CAAAAAUAAGUAUGGAAAUCAACAAGUGCAAUCG-----AUAUAAGCAAAAACCCACCUGCAGGGCUGCCUGGCAAAAUGUGGCAUCAAUUAGCACUUGGUAGGGUU ................((((..((((((((((.(-----((...........(((.......)))..(((...........)))))).))).)))))))....)))) ( -21.10) >DroYak_CAF1 3309 102 + 1 CAAAAAUAACUAUGAAAAUCAACAAGUGCUAUUU-----AUAUAUGAAAGACUGAACCUGCAGGGCUGCCUGGCAGAAGGUGGCAUCAAUCAGCACUUGGUAGGGUU ................((((..((((((((.(((-----(....)))).((.(((.((....))((..(((......)))..)).))).))))))))))....)))) ( -27.30) >consensus AAAAAAUAACUAUGGAAAUCAACAAGUGCUAUAG_____AUAUAAGCAAAAACCAACCUGCAGGGCUGCCUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU ......................(((((((((.........................((....))((..(((......)))..))......)))))))))........ (-19.83 = -20.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:37 2006