Locus 5558

Sequence ID	2L_DroMel_CAF1
Location	15,826,728 – 15,826,819
Length	91
Max. P	0.975545

overview

Window 7

Location	15,826,728 – 15,826,819
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	95.66
Mean single sequence MFE	-24.67
Consensus MFE	-21.40
Energy contribution	-21.64
Covariance contribution	0.24
Combinations/Pair	1.05
Mean z-score	-1.87
Structure conservation index	0.87
SVM decision value	1.75
SVM RNA-class probability	0.975545
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15826728 91 - 22407834
CUAACCUGCCUC-CAUUCGCAUUGUCCCCUUUGCAGUCUGGUCGGAUCGGGUUUCAGCCUUUUCGACCAUGGCC-CAAACUCAAUUCAUGUUU
.......(((..-.....(((..(....)..)))....((((((((..((((....)))).)))))))).))).-.................. ( -22.00)
>DroSec_CAF1 18882 91 - 1
CUAACCUGCCUC-CAUUCGCAUUGUCUCCUUGGCAGUCUGGUCGGAUCGGGUUUCAGCCUUUUCGACCAUGGCC-CAAACUCAAUUCAUGUUU
.......(((..-.....(.((((((.....)))))))((((((((..((((....)))).)))))))).))).-.................. ( -23.80)
>DroSim_CAF1 18882 92 - 1
CUAACCUGCCUCGCAUUCGCAUUGUCUCCUUGGCAGUCUGGUCGGAUCGGGUUUCAGCCUUUUCGACCAUGGCC-CAAACUCAAUUCAUGUUU
.......(((..((....))((((((.....)))))).((((((((..((((....)))).)))))))).))).-.................. ( -24.50)
>DroEre_CAF1 19105 92 - 1
CUAACCUGCUUC-CAUUCGCAUUGUCUCCUUGGCAGUCUGGUCGGAUCGGGUUUCAGCCGUUUCGACCAUGGCCUCAAACUCAAUUCGUGUUU
............-....((.((((.......(((....((((((((.(((.......))).))))))))..))).......)))).))..... ( -24.14)
>DroYak_CAF1 47661 92 - 1
CUAACCUGCCUC-CGUUCGCAUUGUCUCCUUGGCAGUGUGGUCGGAUCGGGUUUCAGCCUUUUCGACCAUGGCCUCAAACUCAAUUCGUGUUU
..((((((..((-((..(((((((((.....)))))))))..)))).))))))...(((...........))).................... ( -28.90)
>consensus
CUAACCUGCCUC_CAUUCGCAUUGUCUCCUUGGCAGUCUGGUCGGAUCGGGUUUCAGCCUUUUCGACCAUGGCC_CAAACUCAAUUCAUGUUU
.......(((..........((((((.....)))))).((((((((..((((....)))).)))))))).))).................... (-21.40 = -21.64 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:06 2006