Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,821,045 – 15,821,138 |
Length | 93 |
Max. P | 0.634742 |
Location | 15,821,045 – 15,821,138 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.77 |
Mean single sequence MFE | -13.89 |
Consensus MFE | -10.22 |
Energy contribution | -9.90 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.17 |
Mean z-score | -2.24 |
Structure conservation index | 0.74 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15821045 93 + 22407834 AACAUGUGAUAAAACUAUUAUUAAAGCUCUUGUCUCUUCCAUCAUUGGCUUUAGUAAUGUUAAGACUCCGAGCUAUUUUACCAUAUUUUCACU .....((((...(((.((((((((((((..((..........))..))))))))))))))).((........))..............)))). ( -15.50) >DroSec_CAF1 15648 92 + 1 AACGUCUGACCAAACUAUUAUUAAAGCUCUUUUCUUUUCUAU-AUUGACUUUAAUAAUGUUGAGUCCCCGAGCUAUUUUACCAAAUUUUCUUU ..((...(((..(((.((((((((((.((.............-...)))))))))))))))..)))..))....................... ( -13.09) >DroSim_CAF1 15623 92 + 1 AACGUCUGACCAAACUAUUAUUAAAGCUCUUUUCUUUUCUAU-AUUGACUUUAAUAAUGUUGAGUCCCCGAGCCAUUUUACCAAAUUUUCUUU ..((...(((..(((.((((((((((.((.............-...)))))))))))))))..)))..))....................... ( -13.09) >consensus AACGUCUGACCAAACUAUUAUUAAAGCUCUUUUCUUUUCUAU_AUUGACUUUAAUAAUGUUGAGUCCCCGAGCUAUUUUACCAAAUUUUCUUU .......(((..(((.((((((((((.((.................)))))))))))))))..)))........................... (-10.22 = -9.90 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:02 2006