| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,820,781 – 15,820,887 |
| Length | 106 |
| Max. P | 0.746020 |
| Location | 15,820,781 – 15,820,887 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.94 |
| Mean single sequence MFE | -12.91 |
| Consensus MFE | -0.55 |
| Energy contribution | -1.27 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.04 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15820781 106 - 22407834 AAACAUCGAACAAUGCUGGACAACCUAAACAACUCAAUAAAUCAACUGUCGACUGA----GUGGC-CUUUC-CUGC---CACCGAAAACAGGAAA-AAAAUUGUAAAACAAAACAC .........((((((((((....))......(((((.................)))----)))))-.((((-(((.---.........)))))))-...)))))............ ( -14.23) >DroPse_CAF1 14619 99 - 1 --CCAUUGAACAAAGCCAGGCAACCUCAACAACUCAAUAAAUCAGCUCUCUACUGAUUGUGUAGCUCUUUCCCCGCUUCCUCCCGAAAAAG--------------AAACAACACA- --..(((((.........(....).........))))).((((((.......))))))((((...(((((...((........))..))))--------------)....)))).- ( -11.67) >DroSec_CAF1 15398 107 - 1 AAACAUCGAACAAUACUGGACAACCUAAACAACUCAAUAAAUCAACUGUCGACUGA----GUAGC-CUUUC-CUGC---CACCAAAAACAGGAAAAAAAAUUGUAAAACAAAACAC .........(((((.................(((((.................)))----))...-.((((-(((.---.........)))))))....)))))............ ( -12.13) >DroSim_CAF1 15396 107 - 1 AAACAUCGAACAAUAGUGGACAACCUAAACAACUCAAUAAAUCAACUGUCGACUGA----GUAGC-CUUUC-CUGC---CACCAAAAACAGGAAAAAAAAUUGUAAAACAAAACAC .........((((((((.((((........................)))).)))..----.....-.((((-(((.---.........)))))))....)))))............ ( -14.86) >DroPer_CAF1 25932 99 - 1 --CCAUUGAACAAAGCCAGGCAACCUCAACAACUCAAUAAAUCAGCUCUCUACUGAUUGUGUAGCUCUUUCCCCGCUUCCUCCCGAAAAAG--------------AAACAACACA- --..(((((.........(....).........))))).((((((.......))))))((((...(((((...((........))..))))--------------)....)))).- ( -11.67) >consensus AAACAUCGAACAAUGCUGGACAACCUAAACAACUCAAUAAAUCAACUGUCGACUGA____GUAGC_CUUUC_CUGC___CACCAAAAACAGGAAA_AAAAUUGUAAAACAAAACAC .............................................((((...........((((........))))...........))))......................... ( -0.55 = -1.27 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:01 2006