Locus 5553

Sequence ID 2L_DroMel_CAF1
Location 15,820,256 – 15,820,368
Length 112
Max. P 0.903929
window8811

overview

Window 1

Location 15,820,256 – 15,820,368
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.46
Mean single sequence MFE -37.07
Consensus MFE -31.23
Energy contribution -31.73
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.84
SVM decision value 1.03
SVM RNA-class probability 0.903929
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15820256 112 - 22407834
CAAAUCCCAUUGUCACCCGGUUUCGGCAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACGCUGGGACUCUGGG--------
.....((((..(((..(((((((((.....)))))))))((((((.((....)).)))))).(((((.(((.((((((........))))))))).)))))..)))..))))-------- ( -39.90)
>DroPse_CAF1 13960 119 - 1
CAAAUCCCAUUGUCACCCGGUUUCGGGAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACACAGU-GAGCGGCGAAAGCAGA
.......((((((..((((((((((.....))))))))((....(((..(((.(((......))).)))..)))((((........)))).)).))..)))))-)....((....))... ( -35.40)
>DroSim_CAF1 14872 111 - 1
CAAAUCCCAUUGUCACCCGGUUUCGGCAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACGCUCU-GCUCUGGG--------
.....((((((((((.(((((((((.....)))))))))........)))))).......(((((((.(((.((((((........))))))))).)))))))-....))))-------- ( -39.50)
>DroPer_CAF1 25285 119 - 1
CAAAUCCCAUUGUCACCCGGUUUCGGGAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACACAGU-GAGCGGCGAAAGCAGA
.......((((((..((((((((((.....))))))))((....(((..(((.(((......))).)))..)))((((........)))).)).))..)))))-)....((....))... ( -35.40)
>DroEre_CAF1 14737 109 - 1
CAAAUCCCAUUGUCACCCGGUUUCGGCAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACGCU---ACUCUGGG--------
.....((((((((((.(((((((((.....)))))))))........)))))).......(..((((.(((.((((((........))))))))).)))).---.)..))))-------- ( -36.20)
>DroYak_CAF1 41391 109 - 1
CAAAUCCCAUUGUCACCCGGUUUGGGCAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACGCU---UCACUGGG--------
.....((((((((((.(((((((.(.....).)))))))........))))))......((((((((.(((.((((((........))))))))).)))))---))).))))-------- ( -36.00)
>consensus
CAAAUCCCAUUGUCACCCGGUUUCGGCAUUCGAAAUUGGCAAAUAAUUGACAAGCUAUUUGGGGCGUGUUGAUUGGCAAAAACUAAUGCCAGCAGGACGCUGU_GCUCUGGG________
.....((((((((((.(((((((((.....)))))))))........))))))......))))((((.(((.((((((........))))))))).)))).................... (-31.23 = -31.73 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:00 2006