Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,818,482 – 15,818,575 |
Length | 93 |
Max. P | 0.732296 |
Location | 15,818,482 – 15,818,575 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.47 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -3.23 |
Energy contribution | -3.67 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.25 |
Mean z-score | -2.97 |
Structure conservation index | 0.12 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15818482 93 + 22407834 AGACUGAAGCC-----CGGAUUCUGGAGUUGUUAGUUGUG---GCAUUC---------GCACACA-------ACAGGUACACACAAAACAA---UUCCACAUUGGGCAAGUCAAUUAAAA .((((...(((-----(((....((((((((((.((((((---((....---------)).))))-------)).(.....)....)))))---)))))..)))))).))))........ ( -34.50) >DroPse_CAF1 11612 114 + 1 ---CGGAAGCCUUUGCCAAUGUCUGGAGUGGUGCGCUUUG---CCACUCCUCGGGUCUACAUACGGUUACACACAGGUACCAACGGAGCAAAAUUCCCGCAUGUAGCAAGUCAAUUAAAA ---.((((...(((((...(((..((((((((.......)---)))))))..............(((.((......))))).)))..))))).)))).((.....))............. ( -27.40) >DroSec_CAF1 13078 93 + 1 AGACUGAAGCC-----CGGAUUCUGGAGUUGUUAGUUGUG---GCAUUC---------GCACACA-------ACAGGUACACACAAAACAA---UUCCACAUUGGGCAAGUCAAUUAAAA .((((...(((-----(((....((((((((((.((((((---((....---------)).))))-------)).(.....)....)))))---)))))..)))))).))))........ ( -34.50) >DroSim_CAF1 13086 93 + 1 AGACUGAAGCC-----CGGAUUCUGGAGUUGUUAGUUGUG---GCAUUC---------ACACACA-------ACAGGUACACACAAAACAA---UUCCGCAUUGGGCAAGUCAAUUAAAA .((((...(((-----(((....((((((((((.((((((---......---------...))))-------)).(.....)....)))))---)))))..)))))).))))........ ( -31.00) >DroEre_CAF1 12839 79 + 1 AG-------------------UCUGGAGUUGUUCGUUGUG---GCAUUU---------GCACACA-------ACAGGUACACACAAAACAA---UUCCGCAUUGGGCAAGUCAAUUAAAA .(-------------------((((((((((((.((((((---((....---------)).))))-------)).(.....)....)))))---)))).....))))............. ( -21.90) >DroYak_CAF1 38592 82 + 1 AG-------------------CCUGGAGUUAUUAACAGUGUCUGCAAUU---------GCACACA-------ACAGGUACACACAAAACAA---UUCCGCAUUGGGCAAGUCAAAUCAAU .(-------------------(((((((((.......((((.(((..((---------(....))-------)...))).)))).....))---)))).....))))............. ( -15.30) >consensus AG_CUGAAGCC_____CGGAUUCUGGAGUUGUUAGUUGUG___GCAUUC_________GCACACA_______ACAGGUACACACAAAACAA___UUCCGCAUUGGGCAAGUCAAUUAAAA .......................(((((.......(((((...((...............................))...)))))........)))))..................... ( -3.23 = -3.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:56 2006