Locus 5548

Sequence ID 2L_DroMel_CAF1
Location 15,809,365 – 15,809,482
Length 117
Max. P 0.609929
window8802

overview

Window 2

Location 15,809,365 – 15,809,482
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.52
Mean single sequence MFE -24.85
Consensus MFE -13.90
Energy contribution -14.82
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.83
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.609929
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15809365 117 - 22407834
GUGCGUAACAAAUAGAAAUUUGCCAAGAAAAUAAUUGAACUUCAAUUGAGUGAGAGCAUGUGCAGAAUUUCAAGUAUACGUAUUACCGCCU---GUAUGUAUAGAAAGAGCCAAACGCAC
((((((........(((((((((((......((((((.....)))))).((....)).)).)))).)))))...(((((((((........---)))))))))...........)))))) ( -28.90)
>DroSec_CAF1 3915 117 - 1
GUGCGUAACAAAUAGAAAUUUGCCAAGAAAAUAAUUGAACUUCAAUUGAGUGAGAGCAUGUGCAGAAUUUCAAGUAUACGUAUUACCGGCU---GUUCGUAUAGAAAGAGCCAAACGCAC
((((((........(((((((((((......((((((.....)))))).((....)).)).)))).)))))................((((---.(((.....)))..))))..)))))) ( -30.20)
>DroSim_CAF1 3929 117 - 1
GUGCGUAACAAAUAGAAAUUUGCCAAGAAAAUAAUUGAACUUCAAUUGAGUGAGAGCAUGUGCAGAAUUUCAAGUAUACGUAUUACCGGCU---GUACGUAUAGGAAGAGCCAAACGCAC
((((((........(((((((((((......((((((.....)))))).((....)).)).)))).)))))...(((((((((........---)))))))))((.....))..)))))) ( -31.20)
>DroPer_CAF1 8012 116 - 1
GUGCGUAGCCAAUAGAAAUUUGCUAGGAAAAUAAUUUAACUCCAAUUGAGUGCGAGCAUGUGCAGAAUUUCAAAUAA----AUUGCCGGAGCACACACUCGCAGGUUGAACAAAAAAUAA
((...(((((............................((((.....))))(((((..(((((..............----.........)))))..))))).))))).))......... ( -23.40)
>DroEre_CAF1 4001 95 - 1
GUGCGUAACAAAUAGAAAUUUGCCAAGAAAAUAAUUGAACUUCAAUUGAGUGAGAGCAUGUGCAGAAUAUCAAGUAUACGCAUUACCGGCU---GUAU----------------------
(((((((((..(((....(((((((......((((((.....)))))).((....)).)).))))).)))...)).)))))))........---....---------------------- ( -17.70)
>DroYak_CAF1 29004 95 - 1
GUGCGUAACAAAAAGAAAUUUGCCAAGAAAAUAAUUGAACUUCAAUUGAGUGAGAGCAUGUGCAGAAUUUCAAGUAUACGUAUUACCGACU---GUAU----------------------
(((((((((.....(((((((((((......((((((.....)))))).((....)).)).)))).)))))..)).)))))))........---....---------------------- ( -17.70)
>consensus
GUGCGUAACAAAUAGAAAUUUGCCAAGAAAAUAAUUGAACUUCAAUUGAGUGAGAGCAUGUGCAGAAUUUCAAGUAUACGUAUUACCGGCU___GUACGUAUAG_AAGAGCCAAACGCAC
(((((((.......(((((((((((......((((((.....)))))).((....)).)).)))).))))).....)))))))..................................... (-13.90 = -14.82 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:52 2006