Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,806,981 – 15,807,095 |
Length | 114 |
Max. P | 0.994112 |
Location | 15,806,981 – 15,807,095 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -38.00 |
Consensus MFE | -32.42 |
Energy contribution | -33.22 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.15 |
Mean z-score | -2.20 |
Structure conservation index | 0.85 |
SVM decision value | 2.45 |
SVM RNA-class probability | 0.994112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15806981 114 + 22407834 GGUGAGUGUGUUUGUUGCUGUCAGUUUGAGUUCCGCUUUUGGGGGACGCUAACUUUCGACUUCCUGUCAAUGGUGACAGCUGCAGCGGUCUAGCUGACCUUUCUCUCCAUCGCC ((.(((...(((.((.((((((((((...(((((.(....).)))))...)))....(((.....))).....))))))).)))))((((.....))))...))).))...... ( -39.40) >DroSec_CAF1 1508 114 + 1 GGUGAGUGUGUUUGUUGCUGUCAGUUUCAGUUCCGCUUUUGGGGGACGCUAACUUUUGACUUCCUGUCAAUGGUGACAGCUGCAGCGGUCUAGCUGACCUUUCUCUCCAUCGCC ((.(((...(((.((.((((((.......(((((.(....).)))))....(((.(((((.....))))).))))))))).)))))((((.....))))...))).))...... ( -40.90) >DroSim_CAF1 1520 114 + 1 GGUGAGUGUGUUUGUUGCUGUCAGUUUCAGUUCCGCUUUUGGGGGACGCUAACUUUUGACUUCCUGUCAAUGGUGACAGCUGCAGCGGUCUAGCUGACCUUUCUCUCCAUCGCU ((.(((...(((.((.((((((.......(((((.(....).)))))....(((.(((((.....))))).))))))))).)))))((((.....))))...))).))...... ( -40.90) >DroEre_CAF1 1513 114 + 1 GGCGAGUGUGUUUGUUGCUGUCAGUUUCAGUUCCGCUUUUGGUGGAUGCCAACUUUUGACUUCCUGUCAAUGGUGACAUCUGCAGCGGUCUAGCUGACCUUUCUCUCCAUCGCU (((((.((.(...(.....(((((((..((..(((((....(..((((...(((.(((((.....))))).)))..))))..)))))).)))))))))....)...)))))))) ( -36.70) >DroYak_CAF1 25122 112 + 1 UGUGAGAGUGCUUGUUGCUGUCAGUUUCAGUUCUGCUUUUUG-GGACGCUAACUUUUCACUUCCUUUCAAUAGUGACAGCUGCAGCGGUCUAGCUGACCUUU-UCUCCAUCGCU ((.(((((.(((.((.((((((((((...(((((.......)-))))...))))....(((..........))))))))).)))))((((.....))))..)-))))))..... ( -32.10) >consensus GGUGAGUGUGUUUGUUGCUGUCAGUUUCAGUUCCGCUUUUGGGGGACGCUAACUUUUGACUUCCUGUCAAUGGUGACAGCUGCAGCGGUCUAGCUGACCUUUCUCUCCAUCGCU (((((....(((.((.((((((.......(((((.(....).)))))....(((.(((((.....))))).))))))))).)))))((((.....))))..........))))) (-32.42 = -33.22 + 0.80)
Location | 15,806,981 – 15,807,095 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -26.22 |
Energy contribution | -26.62 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.86 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15806981 114 - 22407834 GGCGAUGGAGAGAAAGGUCAGCUAGACCGCUGCAGCUGUCACCAUUGACAGGAAGUCGAAAGUUAGCGUCCCCCAAAAGCGGAACUCAAACUGACAGCAACAAACACACUCACC ......((.(((...((((.....))))(((((((((((((....)))))).........((((.((...........))..))))....))).))))..........))).)) ( -29.70) >DroSec_CAF1 1508 114 - 1 GGCGAUGGAGAGAAAGGUCAGCUAGACCGCUGCAGCUGUCACCAUUGACAGGAAGUCAAAAGUUAGCGUCCCCCAAAAGCGGAACUGAAACUGACAGCAACAAACACACUCACC ......((.(((...((((.....))))(((((((((((((....)))))).........((((.((...........))..))))....))).))))..........))).)) ( -30.30) >DroSim_CAF1 1520 114 - 1 AGCGAUGGAGAGAAAGGUCAGCUAGACCGCUGCAGCUGUCACCAUUGACAGGAAGUCAAAAGUUAGCGUCCCCCAAAAGCGGAACUGAAACUGACAGCAACAAACACACUCACC ......((.(((...((((.....))))(((((((((((((....)))))).........((((.((...........))..))))....))).))))..........))).)) ( -30.30) >DroEre_CAF1 1513 114 - 1 AGCGAUGGAGAGAAAGGUCAGCUAGACCGCUGCAGAUGUCACCAUUGACAGGAAGUCAAAAGUUGGCAUCCACCAAAAGCGGAACUGAAACUGACAGCAACAAACACACUCGCC .((((((........((((.....))))(((((((.(((((....)))))(((.((((.....)))).))).((......))........))).))))........)).)))). ( -33.80) >DroYak_CAF1 25122 112 - 1 AGCGAUGGAGA-AAAGGUCAGCUAGACCGCUGCAGCUGUCACUAUUGAAAGGAAGUGAAAAGUUAGCGUCC-CAAAAAGCAGAACUGAAACUGACAGCAACAAGCACUCUCACA .......((((-...((((.....))))(((...((((((.((......))..(((....((((.((....-......))..))))...)))))))))....)))..))))... ( -28.40) >consensus AGCGAUGGAGAGAAAGGUCAGCUAGACCGCUGCAGCUGUCACCAUUGACAGGAAGUCAAAAGUUAGCGUCCCCCAAAAGCGGAACUGAAACUGACAGCAACAAACACACUCACC .......(((.....((((.....))))(((((((((((((....)))))).........((((.((...........))..))))....))).))))..........)))... (-26.22 = -26.62 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:47 2006