Locus 5544

Sequence ID 2L_DroMel_CAF1
Location 15,802,842 – 15,802,962
Length 120
Max. P 0.636272
window8795

overview

Window 5

Location 15,802,842 – 15,802,962
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.78
Mean single sequence MFE -28.60
Consensus MFE -22.02
Energy contribution -21.47
Covariance contribution -0.55
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.77
SVM decision value 0.21
SVM RNA-class probability 0.636272
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15802842 120 - 22407834
ACAAACAUUAAUUUCCAGACAAAAAUAGCAAUCAUGCUGCAGGCUUAGCCUGUAGCUCUAAUAUCUAUCUGACCUAAUUGAAUGCGCACACUGGAGGCGUUUUUUCCCAGAAUCUGUCAC
.................((((......(((.(((.(((((((((...))))))))).......((.....))......))).))).....((((..(......)..))))....)))).. ( -29.70)
>DroSec_CAF1 26710 120 - 1
ACAAGCAUUAAUUCCCUGACAAAAAUAGUAAUCAAGCUGCAGGCUUAGCCUGUAGUUCUAACAUCCAUCUGGACUAAUUGAAUACUGAGUCUAAAGGCGUUUUUUCCCUGAAUCUGUCAC
................(((((....(((((.(((((((((((((...))))))))).......(((....)))....)))).))))).(((....)))................))))). ( -29.00)
>DroSim_CAF1 18021 120 - 1
ACACACAUUAAUUUCCUGACAAGAAAAGUAGUCAAGCUGCAGGCUUAGCCUGUAGUUCUAACAUCCAUCUGGCCUAAUUGAAUACUCAGUCUGAAGGCGUUUUUUCCCUGAAUCUGUCAC
................(((((.((......((..((((((((((...))))))))))...)).........((((.(((((....)))))....))))..............))))))). ( -27.10)
>consensus
ACAAACAUUAAUUUCCUGACAAAAAUAGUAAUCAAGCUGCAGGCUUAGCCUGUAGUUCUAACAUCCAUCUGGCCUAAUUGAAUACUCAGUCUGAAGGCGUUUUUUCCCUGAAUCUGUCAC
.................((((......(((.(((((((((((((...))))))))).....((......))......)))).)))..........((.(......)))......)))).. (-22.02 = -21.47 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:45 2006