| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,802,315 – 15,802,425 |
| Length | 110 |
| Max. P | 0.992790 |
| Location | 15,802,315 – 15,802,425 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 96.96 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -26.69 |
| Energy contribution | -26.69 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.01 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.992790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15802315 110 - 22407834 CGGAAUGGCUAAGAUGGGAAAGCUAUACCCAAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCUGCCGCCUUCUUCUUGCCCAUUCUAUCCCAUUUUUCU .((((((((.((((((((..(((.((.((................)).)))))..))))))))....(((....)))...........).)))))))............. ( -26.79) >DroSec_CAF1 26185 109 - 1 CGGAAUGGCUAAGAUGGGAAAGCUAUACCCAAAACUUAACUAAAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCUGCCGCCUUCUUCUUCCCCAUUCUAUCCCAUUUUUC- .(((((((..((((((((..(((.((.((................)).)))))..))))))))....(((....))).............)))))))............- ( -26.69) >DroSim_CAF1 17496 109 - 1 CGGAAUGGCUAAGAUGGGAAAGCUAUACCCAAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCUGCCGCCUUCUUCUUCCCCAUUCUAUCCCAUUUUUC- .(((((((..((((((((..(((.((.((................)).)))))..))))))))....(((....))).............)))))))............- ( -26.69) >consensus CGGAAUGGCUAAGAUGGGAAAGCUAUACCCAAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCUGCCGCCUUCUUCUUCCCCAUUCUAUCCCAUUUUUC_ .(((((((..((((((((..(((.((.((................)).)))))..))))))))....(((....))).............)))))))............. (-26.69 = -26.69 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:44 2006