Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,802,023 – 15,802,129 |
Length | 106 |
Max. P | 0.779424 |
Location | 15,802,023 – 15,802,129 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 96.88 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -26.90 |
Energy contribution | -26.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 1.00 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15802023 106 - 22407834 AUUUUUCUGCUAUUCUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGCCCU-CCCUCUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU ......((((((....(((..(((....)))..)))..)))))).........-.((...(((..((.((((.(((.....))).)))).))..)))..))...... ( -26.90) >DroSec_CAF1 25892 107 - 1 AUUUUUCUGCUAUUUUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGUCCCCCCCUUUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU ......((((((....(((..(((....)))..)))..))))))...........((...(((..((.((((.(((.....))).)))).))..)))..))...... ( -26.90) >DroSim_CAF1 17204 106 - 1 AUUUUUCUGCUAUUUUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGUCCC-CCCUUUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU ......((((((....(((..(((....)))..)))..)))))).........-.((...(((..((.((((.(((.....))).)))).))..)))..))...... ( -26.90) >consensus AUUUUUCUGCUAUUUUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGUCCC_CCCUUUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU ......((((((....(((..(((....)))..)))..))))))...........((...(((..((.((((.(((.....))).)))).))..)))..))...... (-26.90 = -26.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:43 2006