Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,799,190 – 15,799,308 |
Length | 118 |
Max. P | 0.854925 |
Location | 15,799,190 – 15,799,308 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.67 |
Mean single sequence MFE | -34.39 |
Consensus MFE | -21.75 |
Energy contribution | -21.62 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -2.43 |
Structure conservation index | 0.63 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15799190 118 + 22407834 UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG-GCGGGGUCGAUAAGGACUUAGCAUUA ........((((((((((((((((((((((((((((...)))))))))))......)))))))(((.((...((((.....))))...)).)-)).))))......))))))....... ( -36.70) >DroSec_CAF1 23069 118 + 1 UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG-GUGGGGUCGAUAAGGACUUGGCAUUA ........((((((((((((((((((((((((((((...)))))))))))......)))))))(((.((...((((.....))))...)).)-)).))))......))))))....... ( -34.30) >DroAna_CAF1 22826 118 + 1 UCAUUAGGGCUCCCCCGAAAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUCGUCUGC-UAUUAGCAAAUUUACGGCAGUUUUGGGGUGAGGUUGAUAAGCUCGAGGAUCGA ......((.(((((((((((.....(((((((((((...)))))))))))...........((((-(..............))))))))))))).))).)).......(((.....))) ( -29.84) >DroSim_CAF1 14394 118 + 1 UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG-GCGGGGUCGAUAAGGACUUGGCAUUA ........((((((((((((((((((((((((((((...)))))))))))......)))))))(((.((...((((.....))))...)).)-)).))))......))))))....... ( -36.70) >consensus UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG_GCGGGGUCGAUAAGGACUUGGCAUUA ........((((((...(((((((((((((((((((...)))))))))))......))))))))....(((.(((.(((((.(((....))).))))).))).)))))))))....... (-21.75 = -21.62 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:39 2006