Locus 5538

Sequence ID 2L_DroMel_CAF1
Location 15,797,845 – 15,797,943
Length 98
Max. P 0.891512
window8784

overview

Window 4

Location 15,797,845 – 15,797,943
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 98.64
Mean single sequence MFE -17.30
Consensus MFE -17.30
Energy contribution -17.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 1.00
SVM decision value 0.97
SVM RNA-class probability 0.891512
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15797845 98 - 22407834
AUAUCUUCCUUCACACAAUACAAUUAAUAAUAUUUUAUUGAACUAAUUGGCAUGGCACAGGAAAACACAUAAAUUUGUAGCCACGUAACGUAUUGUUU
..............(((((((..(((((((....)))))))........((.(((((((((............))))).)))).))...))))))).. ( -17.30)
>DroSec_CAF1 21763 98 - 1
AUAUCUUCAUUCACACAAUACAAUUAAUAAUAUUUUAUUGAACUAAUUGGCAUGGCACAGGAAAACAUAUAAAUUUGUAGCCACGUAACGUAUUGUUU
..............(((((((..(((((((....)))))))........((.(((((((((............))))).)))).))...))))))).. ( -17.30)
>DroSim_CAF1 13052 98 - 1
AUAUCUUCAUUCACACAAUACAAUUAAUAAUAUUUUAUUGAACUAAUUGGCAUGGCACAGGAAAACACAUAAAUUUGUAGCCACGUAACGUAUUGUUU
..............(((((((..(((((((....)))))))........((.(((((((((............))))).)))).))...))))))).. ( -17.30)
>consensus
AUAUCUUCAUUCACACAAUACAAUUAAUAAUAUUUUAUUGAACUAAUUGGCAUGGCACAGGAAAACACAUAAAUUUGUAGCCACGUAACGUAUUGUUU
..............(((((((..(((((((....)))))))........((.(((((((((............))))).)))).))...))))))).. (-17.30 = -17.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:35 2006