| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,797,409 – 15,797,507 |
| Length | 98 |
| Max. P | 0.940395 |
| Location | 15,797,409 – 15,797,507 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 97.96 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -28.47 |
| Energy contribution | -28.80 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15797409 98 + 22407834 CCACAAAAGAAACAUAAAUAUAGGAGAGAGGCAACGAGUUCCAAAUGGACGACAGGAUGGUGUUGCUGCUCUCGUGGACAUUGGACAGUGGACACUGG (((....................(((((.(((((((...(((...((.....)))))...))))))).)))))(((..((((....))))..)))))) ( -30.00) >DroSec_CAF1 21330 98 + 1 CCACAAAAGAAACAUAAAUAUAAGAGAGAGGCAACGAGUUCCAAAUGGACGACAGGAUGGUGCUGCUGCUCUCGUGGACAUUGGACAGUGGACACUGG (((....................(((((.((((.((...(((...((.....)))))...)).)))).)))))(((..((((....))))..)))))) ( -26.00) >DroSim_CAF1 12619 98 + 1 CCACAAAAGAAACAUAAAUAUAGGAGAGAGGCAACGAGCUCCAAAUGGACGACAGGAUGGUGUUGCUGCUCUCGUGGACAUUGGACAGUGGACACUGG (((....................(((((.(((((((...(((...((.....)))))...))))))).)))))(((..((((....))))..)))))) ( -29.30) >consensus CCACAAAAGAAACAUAAAUAUAGGAGAGAGGCAACGAGUUCCAAAUGGACGACAGGAUGGUGUUGCUGCUCUCGUGGACAUUGGACAGUGGACACUGG (((....................(((((.(((((((...(((...((.....)))))...))))))).)))))(((..((((....))))..)))))) (-28.47 = -28.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:34 2006