Locus 5536

Sequence ID 2L_DroMel_CAF1
Location 15,796,661 – 15,796,760
Length 99
Max. P 0.995621
window8782

overview

Window 2

Location 15,796,661 – 15,796,760
Length 99
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 71.41
Mean single sequence MFE -30.88
Consensus MFE -17.77
Energy contribution -15.28
Covariance contribution -2.50
Combinations/Pair 1.57
Mean z-score -2.33
Structure conservation index 0.58
SVM decision value 2.60
SVM RNA-class probability 0.995621
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15796661 99 + 22407834
UGAUCUGCAUAUGUA--GCGAUUUCU-------------AGCAGUGUAA---UUAUAUACAUACAUAUGUGUGCGUGCGUUGGUGUGCGAGAGCGCGAGAUGCGGAAAUGUACUGAA
......(((((((((--((.......-------------.)).(((((.---...))))).)))))))))(((((((((((..(((((....))))).)))))....)))))).... ( -33.00)
>DroSec_CAF1 20470 97 + 1
--AUCUGCAUAUGUA--GCGAUUUCU-------------CGCAGUGUAA---UUAUAUACAUACAUAUGUGUGCGUGCGUUGGUGCGCACGAGCGCGAGAUGCGGAAAUGUACUGAA
--.((((((((((((--((((....)-------------))).(((((.---...))))).)))))))((((.(((((((....))))))).)))).....)))))........... ( -37.10)
>DroAna_CAF1 19889 114 + 1
UGAUCUGCAUACGCACAACCACCCCUACACAUCCACACACACAGUCUCGUCCUGACAUACAU---UAAGUGUUUAUCUGUAUGAGUAAGAGAAUUCGCGAGGCGGAAAUGUACUGAA
...(((((...(((...........((((.((..((((.....(((.......)))(.....---)..))))..)).)))).((((......)))))))..)))))........... ( -18.20)
>DroEre_CAF1 20791 97 + 1
UGAUCUGCAUAUGUA--GCGAUUUCU-------------CGCAGUGUAA---UUACAUGCG--AGUAUGUGUGCGUGCGUUUGUGCGCGAGAGCGCGAGAUGCGGAAAUGUACUGAA
...((((((((((((--.......((-------------(((((((...---.))).))))--)))))))))))..((((((.(((((....))))))))))))))........... ( -35.21)
>consensus
UGAUCUGCAUAUGUA__GCGAUUUCU_____________CGCAGUGUAA___UUACAUACAU_CAUAUGUGUGCGUGCGUUGGUGCGCGAGAGCGCGAGAUGCGGAAAUGUACUGAA
...(((((((.................................((((((...)))))).........(((.((((..(....)..))))...)))....)))))))........... (-17.77 = -15.28 +  -2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:33 2006