Locus 5534

Sequence ID 2L_DroMel_CAF1
Location 15,795,039 – 15,795,137
Length 98
Max. P 0.514830
window8779

overview

Window 9

Location 15,795,039 – 15,795,137
Length 98
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 82.87
Mean single sequence MFE -21.05
Consensus MFE -14.25
Energy contribution -13.88
Covariance contribution -0.38
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.68
SVM decision value -0.04
SVM RNA-class probability 0.514830
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15795039 98 + 22407834
CAUUAUGACCAAAGCC----------------GCCCUAAAGCGCUU-UUGCAUAAAAUUCAUAUUAGGCAAGAGGCCGGCGAAAGAAGAUAUGAAAUAAGUAU---GAAUGAACACCA
..(((((.(.(((((.----------------((......))))))-).)))))).(((((((((.(((.....)))..(....).............)))))---))))........ ( -22.00)
>DroSec_CAF1 18824 98 + 1
CAUUAUGACCAAAGCC----------------GCCCUAAAGCGCUU-UUGCAUAAAAUUCAUAUUAGGCACAAGGCCGGCGAAAGAAGAUAUGAAAUAAGUAU---GAAUGAACACCA
..(((((.(.(((((.----------------((......))))))-).)))))).(((((((((.(((.....)))..(....).............)))))---))))........ ( -22.00)
>DroAna_CAF1 17776 118 + 1
UAUUAUGGCCAAAACCAAACCCCUUCUCCGCCUACCAAAAGCACUUUUUGCAUAAAGUUCAUAUUAGGCACAAGGCCAGCGAAGGAAGAUAUGAAAUAAGUACAAAAAAUGAGCACGG
.....(((......))).................((.....((.((((((.((....((((((((.(((.....)))..(....)..))))))))....)).)))))).)).....)) ( -18.20)
>DroSim_CAF1 10025 98 + 1
CAUUAUGACCAAAGCC----------------GCCCUAAAGCGCUU-UUGCAUAAAAUUCAUAUUAGGCACAAGGCCGGCGAAAGAAGAUAUGAAAUAAGUAU---GAAUGAACACCA
..(((((.(.(((((.----------------((......))))))-).)))))).(((((((((.(((.....)))..(....).............)))))---))))........ ( -22.00)
>consensus
CAUUAUGACCAAAGCC________________GCCCUAAAGCGCUU_UUGCAUAAAAUUCAUAUUAGGCACAAGGCCGGCGAAAGAAGAUAUGAAAUAAGUAU___GAAUGAACACCA
((((....................................(((.....)))......((((((((.(((.....)))..(....)..))))))))............))))....... (-14.25 = -13.88 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:30 2006