Locus 5533

Sequence ID 2L_DroMel_CAF1
Location 15,794,661 – 15,794,778
Length 117
Max. P 0.907059
window8778

overview

Window 8

Location 15,794,661 – 15,794,778
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.23
Mean single sequence MFE -17.42
Consensus MFE -6.68
Energy contribution -6.64
Covariance contribution -0.04
Combinations/Pair 1.29
Mean z-score -2.29
Structure conservation index 0.38
SVM decision value 1.05
SVM RNA-class probability 0.907059
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15794661 117 - 22407834
AUCAUAGUAUACCAAAACCUUCCUUUACCAUAAAGCCAAACAUUAGGGGAUAUUU-UUGAACUAAAACAAAACUUCA--UUCUUUUAAGUUGUAUCCAACAUAAGUUGGGCAAAUAUAAA
..................................(((.(((.((((((((...((-(((........))))).....--.))))))))((((....))))....))).)))......... ( -15.00)
>DroSec_CAF1 18451 117 - 1
AUCAAAAAAUACCAAAACCUUCCUAUACCAUAAAGCCAAACAUUAGGGGAUAUUU-UUGAACUAAAACAAAACUUCA--UUCUUUUAAGUUGUAUCCCACAUAAGUUGGGCAAAUAUAAA
..................................(((.(((.(((.(((((((.(-(((((................--....))))))..)))))))...)))))).)))......... ( -17.65)
>DroAna_CAF1 17346 99 - 1
--------------------UUUAUUACCAUCAGGCCACACUCUGACA-AAAUUUACGAAACUAAAAGAAAACUUUCUUUUCUUUUAAAUUGUAUCAAACAUCAGUCUGGCAAAUAAAAA
--------------------..............((((....((((..-.....(((((...((((((((((.....))))))))))..))))).......))))..))))......... ( -18.84)
>DroSim_CAF1 9647 118 - 1
AUCAAAAAAUACCAAAACCUUCCUUUACCAAAAAGCCAAACAUUAGGGGAUAUUUUUUGAACUAAAACAAAACUUCA--UUCUUUUAAGUUGUAUCCAACAUAAGUUGGGCAAAUAUAAA
.((((((((((((.........((((.....))))((........)))).)))))))))).................--..........((((..(((((....)))))))))....... ( -18.10)
>DroEre_CAF1 18647 117 - 1
AUAAUACUAUGCCCCAACCUUUCUUAACCAUCAAGGCAAACAUUAGGAGAUAUUU-CUAAACUAAAACAAAACUUCA--UUCUUUUAAGUUGUAUCCAACAUAAGUUGGGCAAAUAUAGA
......(((((.((((((.((((((((((.....))......)))))))).....-.....................--.........((((....))))....))))))....))))). ( -17.50)
>consensus
AUCAAAAAAUACCAAAACCUUCCUUUACCAUAAAGCCAAACAUUAGGGGAUAUUU_UUGAACUAAAACAAAACUUCA__UUCUUUUAAGUUGUAUCCAACAUAAGUUGGGCAAAUAUAAA
....................................(((...((((((((.......((((............))))...)))))))).)))..((((((....)))))).......... ( -6.68 =  -6.64 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:29 2006