Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,794,245 – 15,794,365 |
Length | 120 |
Max. P | 0.677839 |
Location | 15,794,245 – 15,794,365 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -21.40 |
Energy contribution | -21.44 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.22 |
Mean z-score | -1.52 |
Structure conservation index | 0.80 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15794245 120 - 22407834 UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGAAAAACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU ((((((((((((..((((......((...((((.....))))..))........(((((((...(((((((....)))).)))...)))))))))))......))))).))))))).... ( -30.30) >DroSec_CAF1 18041 119 - 1 UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU ((((((((((((..((((......((...((((.....))))..))........(((((((...(((((..-.....)).)))...)))))))))))......))))).))))))).... ( -26.70) >DroAna_CAF1 16914 118 - 1 UAAUGGUUGCGAUAUUACUCCAAAGGCAAAGUGCUCUCAACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACCAGGCAGCCAAGGAAACAGAACUUGCUAAUCGACAGAA- ...(((((((..............((...(((.......)))..)).....((((((.((........)).-))))))......))))))).(....).....................- ( -21.70) >DroSim_CAF1 9237 119 - 1 UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU ((((((((((((..((((......((...((((.....))))..))........(((((((...(((((..-.....)).)))...)))))))))))......))))).))))))).... ( -26.70) >DroEre_CAF1 18245 119 - 1 UAAUGGUAGCGAUAUUACUCCAAAAGCAAAGUGCUCUUCACUCCGCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU ((((((((((((..((((.......((..((((.....))))..))........(((((((...(((((..-.....)).)))...)))))))))))......))))).))))))).... ( -27.90) >consensus UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA_AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU ((((((((((((............(((.....)))...................(((((((...(((((........)).)))...)))))))..........))))).))))))).... (-21.40 = -21.44 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:28 2006