| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,793,506 – 15,793,615 |
| Length | 109 |
| Max. P | 0.639638 |
| Location | 15,793,506 – 15,793,615 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 98.78 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -30.70 |
| Energy contribution | -30.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15793506 109 + 22407834 GUGGCUUGGCAUUAGCAUGUUGGUUAUACAUAAAGCUGGGCAUCUGGCACAAAAACUUGUGCUGGAGGCAUUGUAAAAACGUUUGCAUUGCUUUGCUUCGUAUUGAGAA (((..(..((((....))))..)...))).(((.((..((((((..((((((....))))))..))((((.((((((....)))))).)))).))))..)).))).... ( -32.90) >DroSec_CAF1 17330 109 + 1 GUGGCUUGGCAUUAGCAUGUUGGUUAUACAUAAAGCUGGGCAUCUGGCACAAAAACUUGUGCAGGAGGCAUUGUAAAAACGUUUGCAUUGCUUUGCUUCGUAUUGAGAA (((..(..((((....))))..)...))).(((.((..(((((((.((((((....)))))).)))((((.((((((....)))))).)))).))))..)).))).... ( -29.70) >DroSim_CAF1 8521 109 + 1 GUGGCUUGGCAUUAGCAUGUUGGUUAUACAUAAAGCUGGGCAUCUGGCACAAAAACUUGUGCAGGAGGCAUUGUAAAAACGUUUGCAUUGCUGUGCUUCGUAUUGAGAA (((..(..((((....))))..)...))).(((.((..(((((((.((((((....)))))).)))((((.((((((....)))))).)))).))))..)).))).... ( -30.30) >consensus GUGGCUUGGCAUUAGCAUGUUGGUUAUACAUAAAGCUGGGCAUCUGGCACAAAAACUUGUGCAGGAGGCAUUGUAAAAACGUUUGCAUUGCUUUGCUUCGUAUUGAGAA (((..(..((((....))))..)...))).(((.((..((((((..((((((....))))))..))((((.((((((....)))))).)))).))))..)).))).... (-30.70 = -30.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:24 2006