Locus 5529

Sequence ID 2L_DroMel_CAF1
Location 15,792,924 – 15,793,043
Length 119
Max. P 0.697432
window8772

overview

Window 2

Location 15,792,924 – 15,793,043
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -32.03
Consensus MFE -28.23
Energy contribution -27.90
Covariance contribution -0.33
Combinations/Pair 1.10
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 0.34
SVM RNA-class probability 0.697432
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15792924 119 + 22407834
CUUUGUUGGCUUAAAGCCAUAUGAGCUC-CUUGGGCUUUCAGUCGUGUUACUCUGGCGCAAUUUUGAUGACACUUGGGCCUGCUUUACAGAGUUUGCUCUGCUCAUACUGACAGGGCUUA
((((((((((.....))).(((((((..-...((((((......((((((.((............))))))))..)))))).......((((....)))))))))))..))))))).... ( -33.80)
>DroSec_CAF1 16734 101 + 1
CUUUGUUGGCUUAAAGCCAUAUGAGCCCUCUCGGGCUUUCAAUCGUGUUACUCUGGCGCAAUUUUGAUGACACUUGGGUC-------------------UGCUCAUACUGACAGGGCUUA
......((((.....))))..((((((((.((((..........((((((.((............)))))))).((((..-------------------..))))..)))).)))))))) ( -30.80)
>DroSim_CAF1 7951 101 + 1
CCUUGUUGGCUUAAAGCCAUAUGAGCCCUCUCGGGCUUUCAAUCGUGUUACUCUGGCGCAAUUUUGAUGACACUUGGGCC-------------------UGCUCAUACUGACAGGGCUUA
((((((((((.....))).(((((((...((((((...((((..(((((.....)))))....)))).....))))))..-------------------.)))))))..))))))).... ( -31.50)
>consensus
CUUUGUUGGCUUAAAGCCAUAUGAGCCCUCUCGGGCUUUCAAUCGUGUUACUCUGGCGCAAUUUUGAUGACACUUGGGCC___________________UGCUCAUACUGACAGGGCUUA
......((((.....))))..((((((((.((((..........((((((.((............)))))))).(((((.....................)))))..)))).)))))))) (-28.23 = -27.90 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:23 2006