| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,792,371 – 15,792,490 |
| Length | 119 |
| Max. P | 0.651573 |
| Location | 15,792,371 – 15,792,490 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.91 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -17.45 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15792371 119 + 22407834 ACCUUCGCCCCCUGGCC-CUUUCCAUCUAUCCAUCCAUCCCAAUCCCAGCUAAAGUGCCAUCGAAUUUCAAUUCAAUUUGCGAGGCAAGGCAUUCGCUAAGGGUGCGAAAAAAUUUCUAU ...(((((.((((((..-....)).......................(((...((((((...((((....))))...((((...)))))))))).))).)))).)))))........... ( -26.70) >DroSec_CAF1 16173 120 + 1 ACCUUCGCCCCCUGGCCCCCUUCCAUCUAUCCAUCCAUCCCAAUCCCAGCUAAAGUGCCAUCGAAUUUCAAUUCAAUUUGCGAGGCGAGGCAUUCGCUAGGGGUGCGAAAAAAUUUCUAU ...(((((((((((((................................((....))(((.(((..((.(((......))).))..))))))....)))))))).)))))........... ( -34.00) >DroAna_CAF1 15211 99 + 1 ---------------CC-CGUUGCGUC-----CCCCAUCCCAAUUUUGGCUAAAGUGCCAUCGAAUUUCAAUUCAAUUUGCGAGGCAAGGCAUUCGCUAAGGGUGCGAAAAAAUGUCUAU ---------------..-((((.((..-----(((..........(((((...((((((...((((....))))...((((...)))))))))).))))))))..))....))))..... ( -22.70) >DroSim_CAF1 7393 119 + 1 ACCUUCGCCCCCUGGCC-CCUUCCAUCUAUCCAUCCAUCCCAAUCCCAGCUAAAGUGCCAUCGAAUUUCAAUUCAAUUUGCGAGGCAAGGCAUUCGCUAAGGGUGCGAAAAAAUUUCUAU ...(((((.((((((..-....)).......................(((...((((((...((((....))))...((((...)))))))))).))).)))).)))))........... ( -26.70) >consensus ACCUUCGCCCCCUGGCC_CCUUCCAUCUAUCCAUCCAUCCCAAUCCCAGCUAAAGUGCCAUCGAAUUUCAAUUCAAUUUGCGAGGCAAGGCAUUCGCUAAGGGUGCGAAAAAAUUUCUAU ......(((....))).....................((...((((((((...((((((...((((....))))...((((...)))))))))).))).)))))..))............ (-17.45 = -17.45 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:22 2006