| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,791,323 – 15,791,437 |
| Length | 114 |
| Max. P | 0.804427 |
| Location | 15,791,323 – 15,791,437 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.93 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -20.66 |
| Energy contribution | -21.34 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15791323 114 - 22407834 -UU--CUUU--UC-GAGACAAGUGUCGGGAAUGUCAUCAAGUGCGUGAUUAAAGCAAAUUAAAAUUGGAUAUCAAGAUGUAUGCCUGACAUUUAUUGGACAGUCGAAGGGGACUUCCAAA -..--((.(--((-((...((((((((((.(((.((((...(((.........)))........(((.....)))))))))).)))))))))).))))).))..((((....)))).... ( -29.90) >DroSec_CAF1 15164 114 - 1 -UU--CUUU--UC-GAGACAAGUGUCGGGAAUGUCAUCAAGUGCGUGAUUAAAGCAAAUUAAAAUUGGAUAUCAAGAUGUAUGCCUGACAUUUAUUGGACAGUCGAAGGGGACUUCCGAA -..--((.(--((-((...((((((((((.(((.((((...(((.........)))........(((.....)))))))))).)))))))))).))))).))((((((....))).))). ( -30.30) >DroAna_CAF1 14029 110 - 1 GUUCCCCUUUCUCGGGAACAAGUGUCGGGAAUGCCGUUGAGUGCGUGA-------AAUGUAAUAUUAUGCGUCAAAAUGUAAGUCUGACAUUUAUUAGACAAU---AGGGGACUAGAGGA ((((((.......))))))((((((((((..(((..((((.(((((((-------.........)))))))))))...)))..))))))))))......(..(---((....)))..).. ( -35.00) >DroSim_CAF1 6384 114 - 1 -UU--CCUU--UC-GAGACAAGUGUCGGGAAUGUCAUCAAGUGCGUGAUUAAAGCAAAUUAAAAUUGGAUAUCAAGAUGUAUGCCUGACAUUUAUUGGACAGUCGAAGGGGACUUUCGAA -((--((((--((-((((.((((((((((.(((.((((...(((.........)))........(((.....)))))))))).)))))))))).))......))))))))))........ ( -31.10) >DroEre_CAF1 13295 113 - 1 --U--CUCU--UC-GAGACAAGUGUCGGGAAUGUCAUCAAGUGCGUGAUUAAAGCAAAUUAAAAUUGGAUACCAAGAUGUAUGCCUGACAUUUAUUGGACAGUCGAAGGGGACUUGUAAA --(--((((--((-((((.((((((((((.(((.((((...(((.........)))........((((...))))))))))).)))))))))).))......)))))))))......... ( -31.80) >consensus _UU__CUUU__UC_GAGACAAGUGUCGGGAAUGUCAUCAAGUGCGUGAUUAAAGCAAAUUAAAAUUGGAUAUCAAGAUGUAUGCCUGACAUUUAUUGGACAGUCGAAGGGGACUUCCGAA ...................((((((((((.(((.((((...(((.........)))........(((.....)))))))))).))))))))))...........((((....)))).... (-20.66 = -21.34 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:21 2006