Locus 5526

Sequence ID 2L_DroMel_CAF1
Location 15,791,120 – 15,791,220
Length 100
Max. P 0.866142
window8769

overview

Window 9

Location 15,791,120 – 15,791,220
Length 100
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 98.01
Mean single sequence MFE -23.27
Consensus MFE -22.09
Energy contribution -22.15
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.95
SVM decision value 0.85
SVM RNA-class probability 0.866142
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15791120 100 - 22407834
-CCAAGUCAACACUUGGCACCCUUUUACAAACUAAAGCUGGCAAUUUCGUGUACGUAUAACUGCGCACACACUACUUUGGUGACAAAAAAUGUGUAGCAUA
-((((((....))))))...................(((((((.....((((.((((....)))).)))).....((((....))))...))).))))... ( -23.30)
>DroSec_CAF1 14961 100 - 1
-CCAAGUCAACAUUUGGCACCCUUUUACAAACUAAAGCUGGCAAUUUCGUGUACGUAUAACUGCGCACACACUACUUUGGUGACAAAAAAUGUGUAGCAUA
-((((((....))))))...................(((((((.....((((.((((....)))).)))).....((((....))))...))).))))... ( -21.00)
>DroSim_CAF1 6181 100 - 1
-CCAAGUCAACACUUGGCACCCUUUUACAAACUAAAGCUGGCAAUUUCGUGUACGUAUAACUGCGCACACACUACUUUGGUGACAAAAAAUGUGUAGCAUA
-((((((....))))))...................(((((((.....((((.((((....)))).)))).....((((....))))...))).))))... ( -23.30)
>DroEre_CAF1 13090 101 - 1
ACCAAGUCAACACUUGGCACCCUUUUACAAACUAAAGCCGGCAAUUUCGUGUACGUAUAAGUGCGCACACACUACUUUGGUGACAAAAAAUGUGUAGCAUA
.((((((....)))))).......................((......((((((......))))))(((((....((((....))))...))))).))... ( -25.50)
>consensus
_CCAAGUCAACACUUGGCACCCUUUUACAAACUAAAGCUGGCAAUUUCGUGUACGUAUAACUGCGCACACACUACUUUGGUGACAAAAAAUGUGUAGCAUA
.((((((....))))))...................(((((((.....((((.((((....)))).)))).....((((....))))...))).))))... (-22.09 = -22.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:20 2006