Locus 5525

Sequence ID 2L_DroMel_CAF1
Location 15,790,488 – 15,790,604
Length 116
Max. P 0.738849
window8768

overview

Window 8

Location 15,790,488 – 15,790,604
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 95.26
Mean single sequence MFE -31.10
Consensus MFE -27.49
Energy contribution -28.30
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -1.76
Structure conservation index 0.88
SVM decision value 0.44
SVM RNA-class probability 0.738849
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15790488 116 - 22407834
UACUUGUGUCAUAUUCAAUUGUGAUUUAUUGCGGUCACACCGCACAAAUUUUUUCCCACAUAUGCGGCACGUGGCUGGGCGAACAACCCCUUCAAAUAAAGUUGCAAAUGUGGAGC
...((((((((((......)))))).....((((.....))))))))........((((((.((((((...(((..(((.......)))..)))......)))))).))))))... ( -32.90)
>DroSec_CAF1 14327 116 - 1
UACUUGUGUCAUAUUCAAUUGUGAUUUAUUGCGGUCACACCGCACAAAUUUUUUCCCACAUAUGCGGCACGUGGCUGGGCGAACAACCCCUUCAAAUAAAGUUGCAAAUGUGGAGC
...((((((((((......)))))).....((((.....))))))))........((((((.((((((...(((..(((.......)))..)))......)))))).))))))... ( -32.90)
>DroSim_CAF1 5547 116 - 1
UACUUGUGUCAUAUUCAAUUGUGAUUUAUUGCGGUCACACCGCACAAAUUUUUUCCCACAUAUGCGGCACGUGGCUGGGCGAACAACCCCUUCAAAUAAAGUUGCAAAUGUGGAGC
...((((((((((......)))))).....((((.....))))))))........((((((.((((((...(((..(((.......)))..)))......)))))).))))))... ( -32.90)
>DroEre_CAF1 12460 112 - 1
----UGCGUCAUAUUCAAUUGUGAUUUAUUGCGGUCACACCGCACAAAUUUUUUCCCACACAUGCGCCACGUGGCUGGGCGAACAACCAAUUCAAAUAAAGUUUUAAAUGUGGAGC
----.((((((((......))))))....(((((.....)))))...........(((((.....(((....)))(((........)))...................))))).)) ( -25.70)
>consensus
UACUUGUGUCAUAUUCAAUUGUGAUUUAUUGCGGUCACACCGCACAAAUUUUUUCCCACAUAUGCGGCACGUGGCUGGGCGAACAACCCCUUCAAAUAAAGUUGCAAAUGUGGAGC
.......((((((......))))))....(((((.....)))))...........((((((.((((((...(((..(((.......)))..)))......)))))).))))))... (-27.49 = -28.30 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:19 2006