Locus 5524

Sequence ID 2L_DroMel_CAF1
Location 15,790,084 – 15,790,197
Length 113
Max. P 0.975588
window8767

overview

Window 7

Location 15,790,084 – 15,790,197
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.14
Mean single sequence MFE -34.64
Consensus MFE -9.90
Energy contribution -12.26
Covariance contribution 2.36
Combinations/Pair 1.28
Mean z-score -2.22
Structure conservation index 0.29
SVM decision value 1.75
SVM RNA-class probability 0.975588
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15790084 113 + 22407834
UAAUGAGCCCGGUACAAGGAAG---CCCACCAUUUUUGGU--UUCUGCUAA--CUGAGCUAACUGAAAUCUUUUACGGUAUCGGUUUGUUCUUAAAUGAGCCAAUUUAUUGUGCUAGGAA
.......((..(((((((((((---((..........)))--))))(((..--..((((.((((((.(((......))).)))))).)))).......))).......))))))..)).. ( -31.30)
>DroSec_CAF1 13953 118 + 1
UAAUGAGCCUGGUACAUGGAAGAACCGCCCAAUGGGGGGU--UUCUGGUUAGCUUGAGCUAACUGAAAUCUUUUACGGUAUCGGUUUGUUCUUAAAUGAGCCAAUUUAUUGUGUUGGAAA
.((..((((.(((((.((((((((((.(((...))).)))--(((.(((((((....)))))))))).)))))))..)))))))))..))..........(((((.......)))))... ( -37.80)
>DroAna_CAF1 12913 106 + 1
UAAUGAGCCUGGUAUAUGGAAGCACA---CCACGGGGAGGUCCUUUGGUUAAGCUGAGCUAACGGAAAUCUGUU--GGCAAAGGC---------GAUGGGGCCAUUUAUUUGAACGGAAA
.((((.((((.((............(---(((.(((.....))).))))...(((..((((((((....)))))--)))...)))---------.)).)))))))).............. ( -31.90)
>DroSim_CAF1 5140 118 + 1
UAAUGAGCCUGGUACAUGGAAGAACCGCCCAAUGGGGGGU--UUCUGGUUAGCUUGAGCUAACUGAAAUCUUUUACGGUAUCGGUUUGUUCUUAAAUGAGCCAAUUUAUUGUGUUGAAAA
(((((((..((((.(((..((((((.((((..((((((((--(((.(((((((....))))))))))))))))))..)....)))..))))))..))).)))).)))))))......... ( -36.40)
>DroEre_CAF1 12013 115 + 1
UAAUGAGCCUGGCAUAUGGAAGCCCAGC---UUUGGGGGU--UUUGGGUUAGGUUGGGCUAGCUGAAGUCCUUUACGAUAUCGGUUCGUUCUUAAAUAGGCCAAUUUAUUGUGUUGGAAA
.....((((..((...(.(((((((...---.....))))--))).).....))..))))........(((..(((((((..(((..(((....)))..)))....)))))))..))).. ( -35.80)
>consensus
UAAUGAGCCUGGUACAUGGAAGAACCGC_CAAUGGGGGGU__UUCUGGUUAGCUUGAGCUAACUGAAAUCUUUUACGGUAUCGGUUUGUUCUUAAAUGAGCCAAUUUAUUGUGUUGGAAA
(((((((...(((.(((..........(((.....))).................((((.((((((.(((......))).)))))).))))....))).)))..)))))))......... ( -9.90 = -12.26 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:18 2006