Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,787,736 – 15,787,849 |
Length | 113 |
Max. P | 0.772698 |
Location | 15,787,736 – 15,787,849 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.09 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -20.44 |
Energy contribution | -20.83 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.85 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15787736 113 - 22407834 ---UCCACCA----UCCAAACCAGAUGCGACCACGCCCUCCAAUCGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----.......((((((......(((.....((((((((((....))))).((.((((((((....)))))))))).......))))).....)))......)))))).. ( -22.30) >DroSec_CAF1 11588 113 - 1 ---UCCACCA----UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----..(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. ( -23.40) >DroAna_CAF1 10607 120 - 1 CGCCCCACCAGCAGUUCAAGCCAUCUGCGACCACGCCCUCCAAUUGUUGUUCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUGGCA ..........((((............(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))......))))(((((....))))). ( -30.20) >DroSim_CAF1 2721 113 - 1 ---UCCACCA----UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----..(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. ( -23.40) >DroEre_CAF1 6274 113 - 1 ---UCCACCA----UCGAAACCAGCUGCGACCACGCCCUCAAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----.........((.(((....(((....(((((.(((((....))))).((.((((((((....))))))))))........)))))....)))......)))..)). ( -20.90) >DroYak_CAF1 2880 113 - 1 ---UCCACCA----UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----..(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. ( -23.40) >consensus ___UCCACCA____UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ................(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. (-20.44 = -20.83 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:13 2006