Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,785,878 – 15,785,981 |
Length | 103 |
Max. P | 0.888415 |
Location | 15,785,878 – 15,785,981 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.60 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -11.05 |
Energy contribution | -10.55 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.44 |
Mean z-score | -1.88 |
Structure conservation index | 0.48 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15785878 103 + 22407834 GAUUGGAUCCCGAGCACUAUUAUAUGGAAAAGGAUAAUAGAUUGGAUCUAGUACAAUAUUUCGAGUUUAGGAGAAAGCU-GGAAAGGAAAAGAUC---------------ACUGUAA-AU .(((((((((.((...(((((((.(....)...))))))).)))))))))))......((((.(((((......)))))-.))))..........---------------.......-.. ( -20.60) >DroSec_CAF1 9759 103 + 1 GAUUAGAUCCCGAUCACUAUUAUAUGGAAAAGGAUAAUAGAUUGGAUCUAGUACAAUAUUUCGAGUUUAGAAGGAAGCU-GGAAAGGAAAAGAUC---------------ACAGUAA-AU .(((((((((.((((..((((((.(....)...)))))))))))))))))))......((((.(((((......)))))-.))))..........---------------.......-.. ( -21.40) >DroAna_CAF1 9082 119 + 1 AAUUGGACUUUAUCGGCUACUAUGAGGGAAGAGAUCAAAGGUUGUGGUUGAUACAACGUUUUGGAUUUAAAAGGAAGGCCAGGAUGGUAAAA-UCCGAUGGCCACCCUUUGCAGUAAGAA ............((...((((..(((((...(((((.((.((((((.....)))))).))...)))))........(((((((((......)-)))..))))).)))))...)))).)). ( -33.10) >DroSim_CAF1 905 103 + 1 GAUUAGAUCCCGAUCACUAUUAUAUGGAAAAGGAUAAUAGAUUGGAUCUAGUUCAAUAUUUCGAGUUUAGAAGGAAGCU-GGAAAGGAAAAGAUC---------------ACAGUAA-AU .....(((....))).(((((((.(....)...)))))))(((((((((..(((....((((.(((((......)))))-.)))).))).)))))---------------.))))..-.. ( -21.80) >DroEre_CAF1 4417 103 + 1 GAUUGGAUCCCGAGUGCUAUUAUAUGGAUAAGGAUAAUAGAUUGGGUCUAGUACAGUUUUUCGAGUUUAAGAGGAAGAC-ACAAAAAAAUUGAAC---------------ACUUACA-AU .((((((.(((((...(((((((..........))))))).)))))))))))...(((((((..........)))))))-...............---------------.......-.. ( -21.90) >DroYak_CAF1 914 97 + 1 GAUUGGACCCCGAGCGCUAUUAUAUGGAAAAGGAUAAUAGAUUGGGUCUGGUACAAUUUUUUGAGUUUAGGAGGAAAA--ACAAAAAA-----UC---------------ACCUAAA-AC .((..(((((.((...(((((((.(....)...))))))).)))))))..)).(((....)))..((((((..((...--........-----))---------------.))))))-.. ( -20.60) >consensus GAUUGGAUCCCGAGCACUAUUAUAUGGAAAAGGAUAAUAGAUUGGAUCUAGUACAAUAUUUCGAGUUUAGAAGGAAGCU_AGAAAGGAAAAGAUC_______________ACAGUAA_AU .(((((((((......(((((((..........)))))))...))))))))).................................................................... (-11.05 = -10.55 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:12 2006