Locus 5519

Sequence ID 2L_DroMel_CAF1
Location 15,785,254 – 15,785,373
Length 119
Max. P 0.625796
window8760

overview

Window 0

Location 15,785,254 – 15,785,373
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.37
Mean single sequence MFE -30.83
Consensus MFE -13.05
Energy contribution -13.75
Covariance contribution 0.70
Combinations/Pair 1.36
Mean z-score -2.09
Structure conservation index 0.42
SVM decision value 0.19
SVM RNA-class probability 0.625796
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15785254 119 + 22407834
AGGUUAUCUUUAAAGCAAUGUGGAGAUUCCAUUAUGUUUACUAUGUGCUCAAUGAAAGAGUACAUCGGCAACAGAUCCGGUUUCAAAAUCAUAUU-GAAUGUACAUAUUUUGAAGGCCUU
((((...((((((((((((((((.((..((....((((..(.((((((((.......)))))))).)..)))).....))..))....)))))))-)..........)))))))))))). ( -27.40)
>DroSec_CAF1 9135 119 + 1
AGGUUAUCUUCACCUCAAUGUGGAGAUUUCAUUAUGUUAACUAUGUGCUCAAUGAAGGAGUACAUCGGAAACAGAUCUUGUUUCGAAAACAUAUU-GAAUGUAAAUAUUUUGAAGGCCUU
(((((((((((((......))))))))((((.((((((..(.((((((((.......)))))))).)(((((((...)))))))...)))))).)-)))...............))))). ( -34.00)
>DroAna_CAF1 8452 119 + 1
AAGUGAUCUUUAUGGGACUAUGGAAAUUCCACUACACCAACUACGUCCUCCGCGAAAGGAUUGCGCGCCAGCAA-UAUCAUUUCAGCAAAAGAUUGGAACUUCAGAGCUUUGAUGGUCUG
(((((((((((.(((.....(((.....))).....)))............((((((..(((((......))))-)....)))).)).)))))))...))))((((.(......).)))) ( -25.60)
>DroSim_CAF1 281 119 + 1
AGGUUAUCUUCACCGCAAUGUGGAGAUUUCAUUAUGUUAACUAUGUGCUCAAUGAAGGAGUACAUCGGAAACAGAUCUUGUUUAAAAAACAUAUU-GAAUGUAAAUAUUUUGAAGGCCUU
(((((((((((((......))))))))((((.((((((..((((((((((.......)))))))).))((((((...))))))....)))))).)-)))...............))))). ( -30.70)
>DroEre_CAF1 3784 119 + 1
AGGCUAUCUUCAGCGCAAUGUGGAGAUUCCAUUACGUUUACUAUGUGCUCUGUGAAAGAGUACAUAGGCAACAGAUGCAGUUUCGCAAUCGUAUU-GAAUUCAAAUAUUUUGAAGACCUU
(((...(((((((...(((((...(((((...((((((..(((((((((((.....)))))))))))..))).(((((......)).))))))..-)))))...))))))))))))))). ( -35.90)
>DroYak_CAF1 281 119 + 1
AGGCUAUAUUCACCGCAAUGUGGAGAUUCCACUAUGUUUACUAUGUGCUCUGUGAAAGAAUACAUAGGCAACAGAUGCAGUUUCGCAAUCGUAUU-GCAUUUAAAAGCUUUGAAGACCUU
(((.....((((..((...((((.....))))...(((..(((((((.(((.....))).)))))))..)))(((((((((..((....)).)))-))))))....))..))))..))). ( -31.40)
>consensus
AGGUUAUCUUCACCGCAAUGUGGAGAUUCCAUUAUGUUAACUAUGUGCUCAAUGAAAGAGUACAUCGGCAACAGAUCCAGUUUCAAAAACAUAUU_GAAUGUAAAUAUUUUGAAGGCCUU
..(..((((((((......))))))))..).....((((...((((((((.......)))))))).(....).........................................))))... (-13.05 = -13.75 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:11 2006