Locus 5518

Sequence ID 2L_DroMel_CAF1
Location 15,780,850 – 15,780,941
Length 91
Max. P 0.885535
window8759

overview

Window 9

Location 15,780,850 – 15,780,941
Length 91
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 67.77
Mean single sequence MFE -14.88
Consensus MFE -9.55
Energy contribution -9.05
Covariance contribution -0.50
Combinations/Pair 1.42
Mean z-score -1.41
Structure conservation index 0.64
SVM decision value 0.94
SVM RNA-class probability 0.885535
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15780850 91 - 22407834
------------------AACAUAGCGAUGCCAUAAUCAAUUCUGAUGCCCUUUGUAGGGCAGGUAAUUAUUUCCGCAAAACUUUCCAAUAAACUAUAGCCUUCAACAU
------------------......(((.((((...((((....))))(((((....))))).))))........)))................................ ( -15.70)
>DroSim_CAF1 32445 88 - 1
------------------AAAAUAGCGAUACCAUAAUCAAUUUUGAUGCCCAUU---GGGCAGGUAAUUAUUGCUGCAUAACUAUUCAUUAAACUAUAACCUUCAACAU
------------------....((((((((((...((((....))))((((...---)))).))))....))))))................................. ( -15.80)
>DroEre_CAF1 34217 109 - 1
CUUAAAUUUUUAUAAGUAACCAAAGUGAUGACAUCAUCGAAUCUAAUGCCUUUUAACGGGCAGUUAAUUAUUUCUCUAUAACUUUCGAUUACACUAAAACCUUCAACAU
...............(((((.(((((((((....))))........(((((......)))))..................))))).).))))................. ( -15.60)
>DroYak_CAF1 33669 109 - 1
CUUUCUUUUUUAUAAGUAACCACAGUAAAUCCGUCAUCAAUUCUGAUGCCCAUUAAAGGGAAGGAAAUUAUUUUAGUAUAACUUUCAAUUAAUCUAUAACCUUCCACAU
................................(.(((((....)))))).........((((((....((..(((((..........)))))..))...)))))).... ( -12.40)
>consensus
__________________AACAUAGCGAUGCCAUAAUCAAUUCUGAUGCCCAUUAAAGGGCAGGUAAUUAUUUCUGCAUAACUUUCCAUUAAACUAUAACCUUCAACAU
............................((((...((((....))))((((......)))).))))........................................... ( -9.55 =  -9.05 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:10 2006