Locus 5517

Sequence ID 2L_DroMel_CAF1
Location 15,778,712 – 15,778,822
Length 110
Max. P 0.877190
window8758

overview

Window 8

Location 15,778,712 – 15,778,822
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.53
Mean single sequence MFE -30.26
Consensus MFE -23.10
Energy contribution -23.22
Covariance contribution 0.11
Combinations/Pair 1.17
Mean z-score -1.90
Structure conservation index 0.76
SVM decision value 0.90
SVM RNA-class probability 0.877190
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15778712 110 - 22407834
GGACAGUGCACAAUAGAAUCGGGCUGGCUAACAAACCCAACUUGUCCGCCUGUGAACUAUAACCAGGGACUCACUUAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAAC
.((((.((((((...(((((((((.(((..((((.......))))..))).)).(((((((((.(((......)))..))))))))).))))))).)))))))))).... ( -38.60)
>DroPse_CAF1 57539 88 - 1
GAGCAGUGUACAAAAGACUUGC----------------------CCCGACUGUGAGCUAUAACUACGGACCCACUCAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAGC
.((((.((((((..((.((..(----------------------.......)..)))).((((((((.((........))))))))))........)))))))))).... ( -18.70)
>DroSim_CAF1 30183 110 - 1
GGACAGUGCACAAUAGAAUCGGGCUGGCUAACAAACCCAACUUGUCCGCCUGUGAACUAUAACCAGGGACUCACUUAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAAC
.((((.((((((...(((((((((.(((..((((.......))))..))).)).(((((((((.(((......)))..))))))))).))))))).)))))))))).... ( -38.60)
>DroEre_CAF1 32027 110 - 1
GGACAGUGCACAAUAGAAUGGGUCUGACUAACAAACCCAACUUGUCCGCUUGUGAACUAUAACCAGGGACUCACUUAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAAC
.((((.((((((...((((.(((..(((((.(((.........((((.((.((........)).)))))).........))))))))))).)))).)))))))))).... ( -31.77)
>DroYak_CAF1 31382 110 - 1
GGACAGUGCACAAUAGAAUCGGUCUGCCUAACAAACCCAACUUGUCCGCUUGUGAACUAUAACUAGGGACUCACUUAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAAC
.((((.((((((...((((((((..((...((((.......))))..)).....(((((((((((((......)))).))))))))))))))))).)))))))))).... ( -35.20)
>DroPer_CAF1 71393 88 - 1
GAGCAGUGUACAAAAGACUUGC----------------------CCCGACUGUGAGCUAUAACUACGGACCCACUCAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAGC
.((((.((((((..((.((..(----------------------.......)..)))).((((((((.((........))))))))))........)))))))))).... ( -18.70)
>consensus
GGACAGUGCACAAUAGAAUCGG_CUG_CUAACAAACCCAACUUGUCCGCCUGUGAACUAUAACCAGGGACUCACUUAUGUUGUAGUUACCGAUUCAUGUGCAUGUUGAAC
.((((.((((((...(((((((........................((....))(((((((((..((......))...))))))))).))))))).)))))))))).... (-23.10 = -23.22 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:09 2006